Merge release/SIENTIAPDE-1646 into feature/SIENTIAPDE-1986-simple-metrics-rewrite
Requirements follow the release; only sientia_model>=0.12.0 (RegressionMetrics), model-library@0.13.1 and scikit-learn==1.8.0 (local) are kept from this branch.
This commit is contained in:
@@ -7,6 +7,8 @@ with workflow.unsafe.imports_passed_through():
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from sientia_do.notifications.handlers import CoreNotificationHandler as NotificationHandler
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from sientia_do.observability.logger import Logger
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from sientia_do.repository.minio_repository_sync import MinioRepository
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from sientia_do.repository.mongodb_repository_sync import MongoDBRepository
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from sientia_do.utils.connectors_config import build_mongodb_config
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from sientia_model.model_repository.mlflow_repository import SientiaMLflowRepository
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from sientia_model.model_repository.plugin_store import PluginStore
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@@ -15,18 +17,21 @@ with workflow.unsafe.imports_passed_through():
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from laborious.activities.mlflow import MLFlow
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from laborious.activities.model_metrics import ModelMetrics
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from laborious.activities.opc import OPC
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from laborious.activities.prediction_metadata import PredictionMetadata
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from laborious.activities.storage import Storage
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from laborious.utils.connectors_config import build_mlflow_config
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class Activities(Storage, MLFlow, Gates, OPC, ModelMetrics, API):
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class Activities(Storage, MLFlow, Gates, OPC, ModelMetrics, API, PredictionMetadata):
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"""
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Central orchestrator for all Temporal activities used by Laborious workflows.
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Composes Storage (Postgres + MinIO offload), MLFlow (wrapper-based inference and retrain
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via ``SientiaMLflowRepository``), Gates (data quality and ML response filters), OPC exports,
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drift/simple metrics, and PI Web API writes. The worker constructs one ``Activities`` instance
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per process and registers its callables on multiple workers bound to different task queues.
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drift/simple metrics, PI Web API writes, and PredictionMetadata (the single write point for
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gate metadata — see `laborious.activities.prediction_metadata`). The worker constructs one
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``Activities`` instance per process and registers its callables on multiple workers bound to
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different task queues.
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MLflow connectivity: unless ``mlflow_repository`` is injected (tests only), this class builds
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``SientiaMLflowRepository`` from ``build_mlflow_config()`` so tracking credentials and URL
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@@ -48,6 +53,7 @@ class Activities(Storage, MLFlow, Gates, OPC, ModelMetrics, API):
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notification_handler: NotificationHandler,
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metrics_controller: MetricsController | None = None,
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mlflow_repository: SientiaMLflowRepository | None = None,
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mongo_repository: MongoDBRepository | None = None,
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):
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"""
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Wire Postgres, MinIO, MLflow, OPC, gates, metrics, and PI Web API into a single object.
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@@ -67,6 +73,9 @@ class Activities(Storage, MLFlow, Gates, OPC, ModelMetrics, API):
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- metrics_controller: Optional shared controller; if ``None``, a new one is created.
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- mlflow_repository: Optional ``SientiaMLflowRepository`` for unit/e2e tests; in production
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leave unset so the repository is built from environment via ``build_mlflow_config()``.
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- mongo_repository: Optional ``MongoDBRepository`` (prediction metadata, best-effort) for
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unit/e2e tests; in production leave unset so the repository is built from environment
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via ``build_mongodb_config()``, same pattern as ``mlflow_repository`` above.
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Raises:
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Exception: If any parent ``__init__`` fails (e.g. invalid config keys).
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@@ -89,6 +98,16 @@ class Activities(Storage, MLFlow, Gates, OPC, ModelMetrics, API):
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metrics_controller=mc,
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)
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if mongo_repository is None:
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mongo_cfg = build_mongodb_config()
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mongo_repository = MongoDBRepository(
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connection_string=mongo_cfg['connection_string'],
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database_name=mongo_cfg['database_name'],
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logger=logger,
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notification_handler=notification_handler,
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metrics_controller=mc,
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)
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minio_repository = MinioRepository(
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endpoint=minio_config['endpoint_url'],
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access_key=minio_config['access_key'],
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@@ -134,6 +153,14 @@ class Activities(Storage, MLFlow, Gates, OPC, ModelMetrics, API):
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metrics_controller=mc,
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)
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PredictionMetadata.__init__(
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self,
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mongo_repository=mongo_repository,
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logger=logger,
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notification_handler=notification_handler,
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metrics_controller=mc,
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)
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OPC.__init__(
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self,
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opc_servers=opc_config,
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@@ -175,3 +202,4 @@ class Activities(Storage, MLFlow, Gates, OPC, ModelMetrics, API):
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OPC.close(self)
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ModelMetrics.close(self)
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API.close(self)
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PredictionMetadata.close(self)
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@@ -27,6 +27,7 @@ with workflow.unsafe.imports_passed_through():
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InputFilterFunc = Callable[[DataFrame, dict[str, Any]], bool]
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ResponseFilterFunc = Callable[[dict[str, Any], dict[str, Any]], bool]
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ContentFilterFunc = Callable[[DataFrame, dict[str, Any]], bool]
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InputCounterFunc = Callable[[DataFrame, dict[str, Any]], int]
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# Input filter function mappings
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input_filter_functions: dict[str, InputFilterFunc] = {
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@@ -34,6 +35,42 @@ input_filter_functions: dict[str, InputFilterFunc] = {
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'EMPTY_DATA': filter_empty_data,
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}
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def _count_specific_variables_null_values(data: DataFrame, config: dict[str, Any]) -> int:
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"""
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Count rows with a null value in one of the configured variables.
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Mirrors `filter_specific_variables_null_values`'s own trigger condition, so the count
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reflects exactly what made that filter fire.
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Return:
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int: Number of rows with a null value in `config['variables']`.
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"""
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if data.empty:
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return 0
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return int((data['variable'].isin(config['variables']) & data['value'].isna()).sum())
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def _count_empty_data(_data: DataFrame, _config: dict[str, Any]) -> int:
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"""
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Count rows for the EMPTY_DATA filter.
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`EMPTY_DATA` only triggers when there are no rows at all, so the count is always 0.
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Return:
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int: Always 0.
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"""
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return 0
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# Per-filter row counts for the `counter` field in prediction metadata (gate-local: mirrors each
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# filter's own trigger condition instead of changing `conditional_filters.py`'s bool contract,
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# which `mlflow_content_gate` also depends on for EMPTY_DATA).
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input_filter_counters: dict[str, InputCounterFunc] = {
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'SPECIFIC_VARIABLES_NULL_VALUES': _count_specific_variables_null_values,
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'EMPTY_DATA': _count_empty_data,
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}
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# Confidence mappings kept separate from function maps to avoid Union types
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input_path_confidence: Mapping[str, int] = {
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'STOP': -1,
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@@ -163,7 +200,9 @@ class Gates(SientiaMonitoring):
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return policy, filter_config
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@activity.defn(name='input_gate')
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def input_gate(self, input_data: dict[str, Any]) -> tuple[str | None, int, str]:
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def input_gate(
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self, input_data: dict[str, Any]
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) -> tuple[str | None, int, str, dict[str, Any] | None]:
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"""
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Apply input data quality filters and validation.
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@@ -178,6 +217,9 @@ class Gates(SientiaMonitoring):
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3. Determines appropriate path decisions (STOP, CONTINUE, REPEAT)
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4. Provides confidence scores and detailed comments
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5. Handles errors gracefully with notification integration
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6. Builds a metadata document describing which filter(s) triggered, with their policy
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and a counter, whenever one does — this activity only computes it, it never writes it
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(see `PredictionMetadata.write_prediction_metadata` for the actual write)
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Args:
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input_data: Configuration and data for input validation
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@@ -188,10 +230,14 @@ class Gates(SientiaMonitoring):
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- path_priority (list[str]): Priority order for path decisions
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Returns:
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tuple: (path_flag, confidence, comment)
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tuple: (path_flag, confidence, comment, document)
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- path_flag (str | None): Decision path (STOP, CONTINUE, REPEAT, or None)
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- confidence (int): Confidence score for the decision
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- comment (str): Detailed explanation of the decision
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- document (dict | None): Metadata describing the filter(s) that produced
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`path_flag`, shaped `{'filters': [{'name', 'policy', 'counter'}, ...]}`;
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`None` when nothing was filtered. Not written anywhere by this activity —
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the caller decides whether and how to persist it.
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Raises:
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Exception: If filter execution fails or configuration is invalid
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@@ -205,7 +251,8 @@ class Gates(SientiaMonitoring):
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data = payload.retrieve(self.minio_repository, metadata)
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path_priority = input_data['path_priority']
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filter_output = []
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# (filter_name, policy, filter_config) per filter that triggered, in configured order
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triggered_filters: list[tuple[str, str, dict[str, Any]]] = []
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self._debug_dataframe('Input data:', data, metadata)
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self.debug(f'Filters: {filters}', metadata)
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@@ -219,7 +266,7 @@ class Gates(SientiaMonitoring):
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try:
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if input_filter_functions[fil](data, filter_config):
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self.debug(f'Data not passed the input filter {fil}:{config}', metadata)
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filter_output.append(policy)
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triggered_filters.append((fil, policy, filter_config))
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except Exception as e:
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trace = traceback.format_exc()
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self.send_notification(
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@@ -231,16 +278,46 @@ class Gates(SientiaMonitoring):
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attachment_content=trace,
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)
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triggered_policies = [policy for _, policy, _ in triggered_filters]
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for path_flag in path_priority:
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if path_flag in filter_output:
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if path_flag in triggered_policies:
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self.info(f'Input gate result: {path_flag}', metadata)
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return path_flag, input_path_confidence[path_flag], 'Input data with bad quality'
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matched = [
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(fil, filter_config)
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for fil, policy, filter_config in triggered_filters
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if policy == path_flag
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]
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document = {
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'filters': [
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{
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'name': fil,
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'policy': path_flag,
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# `.get(..., lambda *_: 0)`, not `[fil]`: a filter added to
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# `input_filter_functions` without a matching counter here degrades to
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# counter=0 instead of a raw KeyError crashing this prediction (review
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# finding, 2026-09-30 — see test enforcing key parity between the two).
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'counter': input_filter_counters.get(fil, lambda *_: 0)(
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data, filter_config
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),
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}
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for fil, filter_config in matched
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],
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}
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return (
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path_flag,
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input_path_confidence[path_flag],
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'Input data with bad quality',
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document,
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)
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self.info('Nothing was filtered by the input gate', metadata)
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del data
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return None, 0, ''
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return None, 0, '', None
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@activity.defn(name='mlflow_response_gate')
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def mlflow_response_gate(self, input_data: dict[str, Any]) -> tuple[str | None, int, str]:
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@@ -636,6 +713,9 @@ class Gates(SientiaMonitoring):
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- model_id (str): Unique identifier for the ML model
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- prediction_confidence (float): Confidence score (typically low for errors)
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- comment (str): Error description or operational comment
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- metadata_id (str | None, optional): Id of the `prediction_metadata` Mongo
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document to reference for this row; `None`/absent when there's nothing to
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reference
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Returns:
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dict: Formatted default prediction data with error indicators
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@@ -653,6 +733,7 @@ class Gates(SientiaMonitoring):
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'prediction_confidence': [input_data['prediction_confidence']],
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'prediction_status': ['Bad'],
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'comments': [input_data['comment']],
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'metadata_id': [input_data.get('metadata_id')],
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}
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)
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@@ -29,6 +29,7 @@ with workflow.unsafe.imports_passed_through():
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from sientia_model.model_repository.plugin_store import PluginStore
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from laborious.utils.dataframe_debug import build_dataframe_debug_message
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from laborious.utils.messages import MISSING_MINIO_REPOSITORY
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from laborious.utils.models.minio_dataframe_payload import MinioDataFramePayload
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@@ -445,7 +446,7 @@ class MLFlow(SientiaMonitoring):
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"""
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if self.minio_repository is None:
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raise ValueError('Minio repository not initialized')
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raise ValueError(MISSING_MINIO_REPOSITORY)
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metadata = input_data['metadata']
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@@ -528,22 +529,23 @@ class MLFlow(SientiaMonitoring):
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)
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# Keep heavy model fitting outside MLflow run timing.
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prediction_data = wrapper.retrain(data)
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prediction_data.rename(columns={target: 'prediction'}, inplace=True)
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prediction_data = wrapper.retrain(data).rename(columns={target: 'prediction'})
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# Merge prediction data with retrain data
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evaluation_data = pd.merge(
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data, prediction_data, left_index=True, right_index=True, how='left'
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# Both frames are indexed by the pivoted timestamp: expose it as an explicit column
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# and join on it. `validate` fails loudly instead of silently multiplying rows if the
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# wrapper ever returns duplicated timestamps.
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evaluation_data = (
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data.reset_index(names='timestamp')
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.merge(
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prediction_data.reset_index(names='timestamp'),
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on='timestamp',
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how='left',
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validate='one_to_one',
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)
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.rename(columns={target: 'target'})
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.sort_values(by='timestamp', ascending=True, ignore_index=True)
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)
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# Rename target column to "target"
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evaluation_data.rename(columns={target: 'target'}, inplace=True)
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# Reset index and put as column "timestamp"
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evaluation_data['timestamp'] = evaluation_data.index
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evaluation_data.reset_index(drop=True, inplace=True)
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evaluation_data.sort_values(by='timestamp', inplace=True, ascending=True)
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run_name = f'{model_name}-retrain-{datetime.now().strftime("%Y%m%d%H%M%S")}'
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with self.mlflow_repository.start_run(
|
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|
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132
laborious/activities/prediction_metadata.py
Normal file
132
laborious/activities/prediction_metadata.py
Normal file
@@ -0,0 +1,132 @@
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from temporalio import activity, workflow
|
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|
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with workflow.unsafe.imports_passed_through():
|
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from typing import Any
|
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|
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from bson import ObjectId
|
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from sientia_do.notifications.handlers import CoreNotificationHandler as NotificationHandler
|
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from sientia_do.observability.logger import Logger
|
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from sientia_do.observability.metrics_controller import MetricsController
|
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from sientia_do.observability.sientia_monitoring import SientiaMonitoring
|
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from sientia_do.repository.mongodb_repository_sync import MongoDBRepository
|
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|
||||
|
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class PredictionMetadata(SientiaMonitoring):
|
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"""
|
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Centralized, best-effort writer for prediction gate metadata (triggered filter, policy,
|
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counter) to MongoDB.
|
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|
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Gates only compute and return a metadata document; they never write it themselves. Keeping
|
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the write here, instead of in each gate, puts the one real write point in the subworkflow
|
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that's about to persist a `predictions` row — the only place that reliably knows whether one
|
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is being written at all — and lets other metadata sources reuse the same activity instead of
|
||||
duplicating write logic wherever they originate.
|
||||
"""
|
||||
|
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mongo_repository: MongoDBRepository | None = None
|
||||
_PREDICTION_METADATA_COLLECTION = 'prediction_metadata'
|
||||
|
||||
def __init__(
|
||||
self,
|
||||
mongo_repository: MongoDBRepository | None = None,
|
||||
logger: Logger | None = None,
|
||||
notification_handler: NotificationHandler | None = None,
|
||||
metrics_controller: MetricsController | None = None,
|
||||
):
|
||||
"""
|
||||
Initialize the prediction metadata writer.
|
||||
|
||||
Args:
|
||||
mongo_repository: MongoDB, where gate metadata (triggered filter, policy, counter) is
|
||||
written best-effort. `None` is a valid state (see `write_prediction_metadata`).
|
||||
|
||||
Raises:
|
||||
Exception: If BaseActivity initialization fails
|
||||
"""
|
||||
self.mongo_repository = mongo_repository
|
||||
SientiaMonitoring.__init__(
|
||||
self,
|
||||
logger=logger,
|
||||
notification_handler=notification_handler,
|
||||
metrics_controller=metrics_controller,
|
||||
)
|
||||
|
||||
def close(self) -> None:
|
||||
"""
|
||||
Close the prediction metadata writer and clean up resources.
|
||||
"""
|
||||
if self.mongo_repository is not None:
|
||||
try:
|
||||
self.mongo_repository.close()
|
||||
finally:
|
||||
self.mongo_repository = None
|
||||
SientiaMonitoring.shutdown(self)
|
||||
|
||||
def __del__(self):
|
||||
self.close()
|
||||
|
||||
@activity.defn(name='write_prediction_metadata')
|
||||
def write_prediction_metadata(self, input_data: dict[str, Any]) -> str | None:
|
||||
"""
|
||||
Best-effort write of one or more gate metadata documents to Mongo, combined into a single
|
||||
`prediction_metadata` document.
|
||||
|
||||
Implements both business rules for this feature in one place:
|
||||
- The prediction write must never be blocked or failed by a metadata write. A failed
|
||||
`insert(...)` is swallowed, never re-raised, logged here with call-site context (which
|
||||
`mongo_repository.insert(...)` itself can't know) — matching how `storage.py`'s
|
||||
`cleanup_minio_objects_expired` also logs again at the call site even though the
|
||||
repository already logs internally and emits its own Prometheus metric
|
||||
(`MONGODB_WRITE_ERROR_COUNT`); the generic library log is for the metric/trace, this
|
||||
one is for whoever is reading logs for this specific call.
|
||||
- Nothing is written when there's nothing relevant to report. An empty/missing
|
||||
`documents` list (or one full of falsy/empty entries) skips Mongo entirely, so callers
|
||||
can call this unconditionally and get `None` back for "no metadata this time" instead
|
||||
of deciding upfront whether there's something worth saving.
|
||||
|
||||
Takes a *list* of documents, not a single one: each caller contributes its own document
|
||||
(shaped like `{'filters': [...]}`), and this flattens every `filters` entry across all of
|
||||
them into one `prediction_metadata` document before the single insert. Today only one
|
||||
gate ever contributes a document per prediction cycle (the gate chain short-circuits on
|
||||
the first non-`None` `path_flag`), but the list shape means this activity won't need to
|
||||
change again once more than one source contributes metadata for the same cycle.
|
||||
|
||||
`insert(...)` doesn't hand back the inserted document's `_id`, so it is generated here,
|
||||
client-side, before the insert, as a plain string (not a BSON ObjectId) — matching this
|
||||
codebase's convention of string `_id`s (e.g. the `models` collection) and the 24-hex-char
|
||||
size of the `predictions.metadata_id` Postgres column that will reference it.
|
||||
|
||||
Args:
|
||||
input_data: Dict with:
|
||||
- documents (list[dict[str, Any]]): Metadata payloads to combine, each shaped
|
||||
like `{'filters': [...]}`. Missing/empty, or entries with no `filters`, skip
|
||||
the write entirely.
|
||||
- metadata (dict): Workflow metadata for contextual logging.
|
||||
|
||||
Return:
|
||||
The generated id, or `None` when there's nothing to write, Mongo isn't configured, or
|
||||
the insert failed.
|
||||
"""
|
||||
metadata = input_data['metadata']
|
||||
documents = input_data.get('documents') or []
|
||||
|
||||
filters = [
|
||||
entry for document in documents if document for entry in document.get('filters', [])
|
||||
]
|
||||
|
||||
if not filters or self.mongo_repository is None:
|
||||
return None
|
||||
|
||||
generated_id = str(ObjectId())
|
||||
|
||||
try:
|
||||
self.mongo_repository.insert(
|
||||
self._PREDICTION_METADATA_COLLECTION,
|
||||
{'filters': filters, '_id': generated_id},
|
||||
metadata,
|
||||
)
|
||||
except Exception as e:
|
||||
self.error(f'Failed to write prediction metadata: {e}', metadata)
|
||||
return None
|
||||
|
||||
return generated_id
|
||||
@@ -2,6 +2,7 @@ from temporalio import activity, workflow
|
||||
|
||||
with workflow.unsafe.imports_passed_through():
|
||||
# Extend the Temporal Postgres activities for convenient query -> MinIO export
|
||||
import time
|
||||
import traceback
|
||||
from datetime import timedelta
|
||||
from typing import Any
|
||||
@@ -9,14 +10,18 @@ with workflow.unsafe.imports_passed_through():
|
||||
import pandas as pd
|
||||
from sientia_do.notifications.handlers import CoreNotificationHandler as NotificationHandler
|
||||
from sientia_do.notifications.models import NotificationLevel
|
||||
from sientia_do.observability import metrics
|
||||
from sientia_do.observability.logger import Logger
|
||||
from sientia_do.observability.metrics_controller import MetricsController
|
||||
from sientia_do.observability.sientia_monitoring import SientiaMonitoring
|
||||
from sientia_do.repository.minio_repository_sync import MinioRepository
|
||||
from sientia_do.temporal.activities.postgres_sync import Postgres
|
||||
from sientia_do.temporal.constants import now
|
||||
from sqlalchemy import text
|
||||
|
||||
from laborious.utils.messages import MISSING_MINIO_REPOSITORY
|
||||
from laborious.utils.models.minio_dataframe_payload import MinioDataFramePayload
|
||||
from laborious.utils.time import to_naive
|
||||
|
||||
_LOAD_QUERY_OFFLOAD_SKIP_KEYS = frozenset({'model_name', 'key_prefix', 'size_threshold_bytes'})
|
||||
|
||||
@@ -24,7 +29,9 @@ _LOAD_QUERY_OFFLOAD_SKIP_KEYS = frozenset({'model_name', 'key_prefix', 'size_thr
|
||||
class Storage(Postgres, SientiaMonitoring):
|
||||
"""
|
||||
Extensions for Postgres activities with a helper to export query results
|
||||
directly to MinIO as Parquet and return the object name.
|
||||
directly to MinIO as Parquet and return the object name, and with
|
||||
``repeat_last_prediction``, a query specific to this repo's REPEAT path
|
||||
(moved here from the shared library — nothing else consumes it).
|
||||
"""
|
||||
|
||||
minio_repository: MinioRepository | None = None
|
||||
@@ -84,7 +91,7 @@ class Storage(Postgres, SientiaMonitoring):
|
||||
dict[str, Any]: Flat ``MinioDataFramePayload`` dict or ``success: False`` on failure.
|
||||
"""
|
||||
if self.minio_repository is None:
|
||||
raise ValueError('Minio repository not initialized')
|
||||
raise ValueError(MISSING_MINIO_REPOSITORY)
|
||||
|
||||
metadata: dict = input_data.get('metadata', {})
|
||||
model_name = input_data['model_name']
|
||||
@@ -139,6 +146,110 @@ class Storage(Postgres, SientiaMonitoring):
|
||||
}
|
||||
)
|
||||
|
||||
def _build_repeat_last_prediction_query(self, schema: str, table_name: str):
|
||||
table_identifier = f'"{schema}".{table_name}'
|
||||
return text( # noqa: S608
|
||||
f"""
|
||||
INSERT INTO {table_identifier} (
|
||||
model_id,
|
||||
prediction,
|
||||
timestamp,
|
||||
response_time,
|
||||
prediction_status,
|
||||
prediction_confidence,
|
||||
metadata_id,
|
||||
created_at
|
||||
)
|
||||
SELECT
|
||||
model_id,
|
||||
prediction,
|
||||
:last_timestamp,
|
||||
response_time,
|
||||
prediction_status,
|
||||
prediction_confidence,
|
||||
:metadata_id,
|
||||
NOW()
|
||||
FROM {table_identifier}
|
||||
WHERE model_id = :model
|
||||
ORDER BY timestamp DESC
|
||||
LIMIT 1;
|
||||
""" # nosec B608
|
||||
)
|
||||
|
||||
@activity.defn(name='repeat_last_prediction')
|
||||
def repeat_last_prediction(self, query_items: dict[str, Any]):
|
||||
"""
|
||||
Insert a new `predictions` row that copies the last one for a model forward in time.
|
||||
|
||||
REPEAT persists a new row (unlike STOP, which persists nothing), reusing the previous
|
||||
row's `prediction`/`response_time`/`prediction_status`/`prediction_confidence` values with
|
||||
a fresh `timestamp`/`created_at`. `metadata_id` references the `prediction_metadata`
|
||||
document for this cycle, if any (see `PredictionMetadata.write_prediction_metadata`);
|
||||
`None` is a valid value — the column is nullable.
|
||||
|
||||
Args (query_items):
|
||||
metadata (dict): Workflow metadata for logging and metrics.
|
||||
schema (str): Postgres schema of the `predictions` table.
|
||||
table_name (str): `predictions` table name.
|
||||
model (str): `model_id` to repeat the last prediction for.
|
||||
last_timestamp: Timestamp to stamp the new row with.
|
||||
metadata_id (str | None): `prediction_metadata` document id, or `None`.
|
||||
|
||||
Raises:
|
||||
Exception: Re-raised after logging/metrics if the insert fails.
|
||||
"""
|
||||
metadata = query_items['metadata']
|
||||
schema = query_items['schema']
|
||||
table_name = query_items['table_name']
|
||||
model = query_items['model']
|
||||
last_timestamp = query_items['last_timestamp']
|
||||
metadata_id = query_items.get('metadata_id')
|
||||
|
||||
repeat_query = self._build_repeat_last_prediction_query(schema, table_name)
|
||||
self.info(f'Repeating last prediction for model {model}', metadata)
|
||||
self.debug(
|
||||
f'Query parameters: schema={schema}, model={model}, last_timestamp={last_timestamp}',
|
||||
metadata,
|
||||
)
|
||||
core_labels = {
|
||||
**self.get_core_labels(metadata, 'execute_sql'),
|
||||
'conflict_mode': 'error',
|
||||
}
|
||||
|
||||
with self.session_factory.begin() as session:
|
||||
try:
|
||||
start_time = time.time()
|
||||
session.execute(
|
||||
repeat_query,
|
||||
{
|
||||
'last_timestamp': last_timestamp,
|
||||
'model': model,
|
||||
'metadata_id': metadata_id,
|
||||
},
|
||||
)
|
||||
except Exception as e:
|
||||
trace = traceback.format_exc()
|
||||
self.send_notification(
|
||||
metadata=metadata,
|
||||
notification_id='ERROR_REPEATING_LAST_PREDICTION',
|
||||
message=f'Error repeating last prediction: {e}',
|
||||
block='repeat_last_prediction',
|
||||
level=NotificationLevel.ERROR,
|
||||
attachment_content=trace,
|
||||
)
|
||||
self.error(trace, metadata)
|
||||
self.emit_metric_sync(
|
||||
metric_object=metrics.POSTGRES_WRITE_ERROR_COUNT,
|
||||
tags=core_labels,
|
||||
)
|
||||
raise
|
||||
else:
|
||||
self.observe_lag_sync(start_time, metrics.POSTGRES_WRITE_LAG, core_labels)
|
||||
self.emit_metric_sync(
|
||||
metric_object=metrics.POSTGRES_WRITE_COUNT,
|
||||
tags=core_labels,
|
||||
)
|
||||
|
||||
@activity.defn(name='cleanup_minio_objects_expired')
|
||||
def cleanup_minio_objects_expired(self, input_data: dict[str, Any]) -> dict[str, Any]:
|
||||
"""
|
||||
@@ -152,15 +263,13 @@ class Storage(Postgres, SientiaMonitoring):
|
||||
dict[str, Any]: ``success``, ``deleted_count``, and optional ``message``.
|
||||
"""
|
||||
if self.minio_repository is None:
|
||||
raise ValueError('Minio repository not initialized')
|
||||
raise ValueError(MISSING_MINIO_REPOSITORY)
|
||||
|
||||
metadata = input_data.get('metadata', {})
|
||||
payload = MinioDataFramePayload.from_dict(input_data['data'])
|
||||
prefix = payload.cleanup_prefix()
|
||||
base = now()
|
||||
cutoff = (base.replace(tzinfo=None) if base.tzinfo else base) - timedelta(
|
||||
hours=self.retention_hours
|
||||
)
|
||||
cutoff = to_naive(base) - timedelta(hours=self.retention_hours)
|
||||
|
||||
report: dict[str, Any] = {
|
||||
'failed': {},
|
||||
@@ -223,7 +332,8 @@ class Storage(Postgres, SientiaMonitoring):
|
||||
sessions, and monitoring hooks), then closes the optional MinIO repository
|
||||
and clears the local reference to avoid accidental reuse after shutdown.
|
||||
"""
|
||||
Postgres.close(self)
|
||||
if hasattr(self, 'engine'):
|
||||
Postgres.close(self)
|
||||
if self.minio_repository is not None:
|
||||
try:
|
||||
self.minio_repository.close()
|
||||
|
||||
1
laborious/utils/messages.py
Normal file
1
laborious/utils/messages.py
Normal file
@@ -0,0 +1 @@
|
||||
MISSING_MINIO_REPOSITORY = 'Minio repository not initialized'
|
||||
@@ -87,7 +87,7 @@ def _opc_authentication_token_str(client: Client | None) -> str:
|
||||
if tok is None:
|
||||
return 'unknown'
|
||||
return str(tok)
|
||||
except Exception:
|
||||
except Exception: # best-effort label for logs/metrics, must not fail loud
|
||||
return 'unknown'
|
||||
|
||||
|
||||
@@ -278,12 +278,14 @@ class OpcRepository(SientiaMonitoring):
|
||||
Configure certificates and timeouts on the sync asyncua client.
|
||||
|
||||
Raises:
|
||||
ValueError: If cert paths or client are missing.
|
||||
ValueError: If cert paths, server URI or client are missing.
|
||||
"""
|
||||
if self.cert_path is None or self.private_key_path is None:
|
||||
raise ValueError(
|
||||
'Certificate and private key paths must be provided for secure connection.'
|
||||
)
|
||||
if self.server_uri is None:
|
||||
raise ValueError('server_uri must be provided for secure connection.')
|
||||
|
||||
cert = Path(self.cert_path)
|
||||
private_key = Path(self.private_key_path)
|
||||
@@ -841,7 +843,10 @@ class OpcRepository(SientiaMonitoring):
|
||||
session_id = _opc_authentication_token_str(self.client)
|
||||
|
||||
try:
|
||||
assert self.client is not None
|
||||
if self.client is None:
|
||||
raise OpcClientNotInitializedError(
|
||||
f'OPC client is not initialized for server {self.id}; cannot write {node}'
|
||||
)
|
||||
node_obj = self.client.get_node(node)
|
||||
except Exception as e:
|
||||
if is_reconnectable_opcua_bad(e):
|
||||
|
||||
6
laborious/utils/time.py
Normal file
6
laborious/utils/time.py
Normal file
@@ -0,0 +1,6 @@
|
||||
from datetime import datetime
|
||||
|
||||
|
||||
def to_naive(moment: datetime) -> datetime:
|
||||
"""Strip tzinfo, if any. Postgres `TIMESTAMP WITHOUT TIME ZONE` columns need naive values."""
|
||||
return moment.replace(tzinfo=None) if moment.tzinfo else moment
|
||||
@@ -8,8 +8,8 @@ repository, single PluginStore handle) but polls a different task queue.
|
||||
Task queues (see ``sientia_do.temporal.worker.prepare_worker``):
|
||||
- ``predictions_batch-{runtime}-queue`` + sub-workflows on the same queue (ML-heavy path).
|
||||
- ``minimal_retrain-{runtime}-queue`` (retrain + promote + export).
|
||||
- ``drift-queue`` and ``simple_metrics-queue`` without a runtime suffix so existing schedulers
|
||||
keep stable queue names.
|
||||
- ``drift-core-queue`` and ``simple_metrics-core-queue``: pinned to the ``core`` runtime because
|
||||
drift and metrics do not load model code, so every runtime shares the same queues.
|
||||
|
||||
Bootstrap order:
|
||||
1. Prometheus app metrics and Mongo-backed notification handler.
|
||||
@@ -24,7 +24,7 @@ Environment Variables:
|
||||
- RUNTIME: Required non-empty string passed to ``install_runtime``.
|
||||
- STORE_* / PYPI_*: Plugin store and private index (see ``build_plugin_store_config``).
|
||||
- TEMPORAL_HOST, TEMPORAL_NAMESPACE: Cluster connection.
|
||||
- POD_ID, HTTP_METRICS_PORT, HTTP_SDK_METRICS_PORT: Observability.
|
||||
- HOSTNAME (pod id), HTTP_METRICS_PORT, HTTP_SDK_METRICS_PORT: Observability.
|
||||
- PROJECT_NAME, MONGODB_*: Notifications (via ``build_mongodb_config`` in handler).
|
||||
- POSTGRES_*, MINIO_*, OPC_*, PI_WEB_API_*, MLFLOW_*: Passed through ``Activities`` helpers.
|
||||
"""
|
||||
@@ -75,14 +75,14 @@ async def main():
|
||||
|
||||
Exits the process with code 0 on normal completion of all worker tasks, or 1 after logging
|
||||
if any worker raises. ``finally`` always shuts down notifications and activities and sets
|
||||
``app_up`` to 0 before ``sys.exit``.
|
||||
``app_up`` to 0; ``sys.exit`` runs after it.
|
||||
|
||||
Raises:
|
||||
Exception: Propagated from ``asyncio.gather`` only before ``finally`` handling; typically
|
||||
workers run until cancelled.
|
||||
|
||||
Return:
|
||||
None (process terminates via ``sys.exit`` from the ``finally`` block).
|
||||
None (process terminates via ``sys.exit`` after the ``finally`` block).
|
||||
"""
|
||||
host = os.getenv('TEMPORAL_HOST', 'localhost:7233')
|
||||
logger = get_logger(__name__)
|
||||
@@ -98,7 +98,7 @@ async def main():
|
||||
logger.custom_info(f'Starting Worker with POD_ID: {POD_ID}', metadata)
|
||||
|
||||
logger.custom_info('Starting prometheus client...', metadata)
|
||||
start_prometheus_server()
|
||||
start_prometheus_server(logger, metadata)
|
||||
|
||||
logger.custom_info('Starting Notification Handler...', metadata)
|
||||
|
||||
@@ -157,7 +157,7 @@ async def main():
|
||||
metrics.APP_UP.labels(pod_id=POD_ID).set(0)
|
||||
sys.exit(1)
|
||||
|
||||
logger.custom_info('Starting Activities...', metadata)
|
||||
logger.custom_info('Starting Activities...', metadata_runtime)
|
||||
|
||||
activities = Activities(
|
||||
postgres_config=build_postgres_config(),
|
||||
@@ -170,10 +170,13 @@ async def main():
|
||||
metrics_controller=metrics_controller,
|
||||
)
|
||||
|
||||
logger.custom_info('Initializing OPC...', metadata)
|
||||
logger.custom_info('Initializing OPC...', metadata_runtime)
|
||||
activities.init_opc()
|
||||
|
||||
logger.custom_info(f'Starting SDK Metrics Server on port {SDK_METRICS_PORT}...', metadata)
|
||||
logger.custom_info(
|
||||
f'Starting SDK Metrics Server on port {SDK_METRICS_PORT}...',
|
||||
metadata_runtime,
|
||||
)
|
||||
|
||||
new_runtime = Runtime(
|
||||
telemetry=TelemetryConfig(
|
||||
@@ -181,7 +184,7 @@ async def main():
|
||||
)
|
||||
)
|
||||
|
||||
logger.custom_info(f'Starting Temporal Client at {host}...', metadata)
|
||||
logger.custom_info(f'Starting Temporal Client at {host}...', metadata_runtime)
|
||||
|
||||
temporal_client = await client.Client.connect(
|
||||
target_host=host,
|
||||
@@ -189,7 +192,7 @@ async def main():
|
||||
runtime=new_runtime,
|
||||
)
|
||||
|
||||
logger.custom_info('Starting Workers...', metadata)
|
||||
logger.custom_info(f'Starting Workers (runtime={runtime})...', metadata_runtime)
|
||||
|
||||
workers = [
|
||||
prepare_worker(
|
||||
@@ -246,6 +249,8 @@ async def main():
|
||||
activities.format_transformed_data,
|
||||
activities.format_prediction,
|
||||
activities.format_default_prediction,
|
||||
# Prediction metadata
|
||||
activities.write_prediction_metadata,
|
||||
# OPC
|
||||
activities.write_opc_data,
|
||||
# Postgres / MinIO offload
|
||||
@@ -267,22 +272,29 @@ async def main():
|
||||
for w in workers:
|
||||
handlers.append(w.run())
|
||||
|
||||
logger.custom_info('Workers started successfully', metadata)
|
||||
logger.custom_info('Workers started successfully', metadata_runtime)
|
||||
|
||||
exit_code = 0
|
||||
try:
|
||||
await asyncio.gather(*handlers)
|
||||
except BaseException as e: # NOSONAR
|
||||
logger.custom_error(f'An unhandled exception occurred: {e}', metadata)
|
||||
except Exception as e:
|
||||
logger.custom_error(f'An unhandled exception occurred: {e}', metadata_runtime)
|
||||
exit_code = 1
|
||||
finally:
|
||||
# No `except (SystemExit, KeyboardInterrupt)` on purpose: `finally` runs on every path,
|
||||
# caught or not, so cleanup still happens for a deliberate shutdown (Ctrl+C, a handler's
|
||||
# own sys.exit) without us having to catch and re-raise it ourselves — which would only
|
||||
# let us relabel its exit code before `sys.exit(exit_code)` below discards it anyway.
|
||||
# Letting it propagate on its own keeps the original code (e.g. a handler's sys.exit(N))
|
||||
# intact instead of collapsing it to 0.
|
||||
notification_handler.shutdown()
|
||||
activities.shutdown()
|
||||
metrics.APP_UP.labels(pod_id=POD_ID).set(0) # Mark app as DOWN
|
||||
sys.exit(exit_code)
|
||||
|
||||
sys.exit(exit_code)
|
||||
|
||||
|
||||
def start_prometheus_server():
|
||||
def start_prometheus_server(logger, metadata: dict):
|
||||
"""
|
||||
Starts the Prometheus metrics server for monitoring and observability.
|
||||
|
||||
@@ -294,7 +306,7 @@ def start_prometheus_server():
|
||||
|
||||
Environment Variables:
|
||||
HTTP_METRICS_PORT: Port for the metrics server (default: 9090)
|
||||
POD_ID: Pod identifier for metrics labeling
|
||||
HOSTNAME: Pod identifier for metrics labeling
|
||||
|
||||
Raises:
|
||||
SystemExit: If the metrics server fails to start
|
||||
@@ -302,10 +314,10 @@ def start_prometheus_server():
|
||||
try:
|
||||
port = int(os.getenv('HTTP_METRICS_PORT', 9090))
|
||||
start_http_server(port)
|
||||
print(f'Prometheus server started on port {port}.')
|
||||
logger.custom_info(f'Prometheus server started on port {port}.', metadata)
|
||||
metrics.APP_UP.labels(pod_id=POD_ID).set(1) # Mark app as UP
|
||||
except Exception as e:
|
||||
print(f'Failed to start Prometheus server: {e}')
|
||||
logger.custom_critical(f'Failed to start Prometheus server: {e}', metadata)
|
||||
os._exit(1)
|
||||
|
||||
|
||||
|
||||
@@ -37,6 +37,7 @@ class Drift:
|
||||
model_config = input_data['model_config']
|
||||
target_name = model_config['target']
|
||||
|
||||
# Built from internal Temporal workflow config, not user input (bandit B608).
|
||||
gathering_query = f"""
|
||||
SELECT *
|
||||
FROM "{input_data['schema']}"."{input_data['source_table_name']}"
|
||||
@@ -44,7 +45,7 @@ class Drift:
|
||||
model_id = '{input_data['model_id']}' AND
|
||||
timestamp > NOW() - INTERVAL '{input_data['interval']} minutes'
|
||||
ORDER BY timestamp ASC
|
||||
""" # nosec B608 - values come from internal Temporal workflow config, not user input
|
||||
""" # nosec
|
||||
|
||||
target_data_handler = workflow.start_activity_method(
|
||||
Activities.load_custom_query,
|
||||
|
||||
@@ -5,6 +5,7 @@ with workflow.unsafe.imports_passed_through():
|
||||
from typing import Any
|
||||
|
||||
from sientia_do.temporal.policies import retry_policy
|
||||
from temporalio.exceptions import ApplicationError
|
||||
|
||||
from laborious.activities.activities import Activities
|
||||
from laborious.utils.models.minio_dataframe_payload import MinioDataFramePayload
|
||||
@@ -87,7 +88,11 @@ class MinimalRetrain:
|
||||
|
||||
storage_payload = MinioDataFramePayload.from_dict(storage_result)
|
||||
if not storage_payload.has_data():
|
||||
raise ValueError('No data returned from query')
|
||||
raise ApplicationError(
|
||||
'No data returned from query',
|
||||
type='NoDataReturnedError',
|
||||
non_retryable=True,
|
||||
)
|
||||
|
||||
experiment_response = await workflow.execute_activity_method(
|
||||
Activities.retrain_model,
|
||||
|
||||
@@ -34,6 +34,7 @@ class SimpleMetrics:
|
||||
model_type = model_config.get('model_type')
|
||||
thresholds = model_config.get('simple_metrics_thresholds')
|
||||
|
||||
# Built from internal Temporal workflow config, not user input (bandit B608).
|
||||
query = f"""
|
||||
select p."timestamp", p.prediction, ld.value as "target"
|
||||
from "{input_data['schema']}"."{input_data['predictions_table_name']}" p
|
||||
@@ -47,7 +48,7 @@ class SimpleMetrics:
|
||||
p."timestamp" >= NOW() - INTERVAL '{interval_minutes} minutes'
|
||||
order by
|
||||
p."timestamp" desc;
|
||||
""" # nosec B608 - values come from internal Temporal workflow config, not user input
|
||||
""" # nosec
|
||||
|
||||
target_data = await workflow.execute_activity_method(
|
||||
Activities.load_custom_query,
|
||||
|
||||
@@ -75,6 +75,11 @@ class FormatAndExportPrediction:
|
||||
Required when path_flag is None
|
||||
- comment (str): Operational comment or error description
|
||||
Required when path_flag is not None
|
||||
- metadata_id (str | None): Id of the `prediction_metadata` Mongo document to
|
||||
reference for this row, already written by the caller; `None` when there's
|
||||
nothing to reference. Only meaningful when path_flag is not None — the
|
||||
normal (path_flag is None) path never has metadata to reference, so this
|
||||
key is irrelevant there.
|
||||
|
||||
Returns:
|
||||
None: The workflow completes successfully when all export operations finish
|
||||
@@ -154,6 +159,7 @@ class FormatAndExportPrediction:
|
||||
'model_id': input_data['model_id'],
|
||||
'prediction_confidence': prediction_confidence,
|
||||
'comment': input_data['comment'],
|
||||
'metadata_id': input_data.get('metadata_id'),
|
||||
},
|
||||
retry_policy=retry_policy,
|
||||
start_to_close_timeout=timedelta(seconds=60),
|
||||
|
||||
@@ -132,7 +132,9 @@ class PredictionProcess:
|
||||
'path_priority': input_data['path_priority'],
|
||||
}
|
||||
|
||||
path_flag, confidence, comment = await workflow.execute_local_activity_method(
|
||||
# `document` describes which filter(s) produced `path_flag` (`None` when nothing was
|
||||
# filtered); `path_flag_handler` is the one that decides whether and how to persist it.
|
||||
path_flag, confidence, comment, document = await workflow.execute_local_activity_method(
|
||||
Activities.input_gate,
|
||||
gate_input,
|
||||
retry_policy=retry_policy,
|
||||
@@ -141,7 +143,7 @@ class PredictionProcess:
|
||||
|
||||
# Handle path decision based on filter results
|
||||
if await self.path_flag_handler(
|
||||
data, path_flag, input_data, confidence, last_timestamp, comment
|
||||
data, path_flag, input_data, confidence, last_timestamp, comment, document
|
||||
):
|
||||
return
|
||||
|
||||
@@ -247,6 +249,51 @@ class PredictionProcess:
|
||||
},
|
||||
)
|
||||
|
||||
async def _write_prediction_metadata(
|
||||
self, metadata: dict[str, Any], document: dict[str, Any] | None
|
||||
) -> str | None:
|
||||
"""
|
||||
Write a gate's metadata document via the centralized write activity.
|
||||
|
||||
Shared by the CONTINUE and REPEAT branches of `path_flag_handler` — both persist a new
|
||||
`predictions` row (`REPEAT` reuses the previous row's values but still inserts a new
|
||||
one), so both need a `metadata_id` to reference it.
|
||||
|
||||
Args:
|
||||
metadata: Workflow metadata for contextual logging.
|
||||
document: Metadata produced by the gate that resolved this `path_flag`; `None` when
|
||||
nothing was filtered, or when the gate that produced this `path_flag` doesn't
|
||||
build one yet.
|
||||
|
||||
Return:
|
||||
The generated id, or `None` when there's nothing to write, including when the
|
||||
activity call itself fails (see `PredictionMetadata.write_prediction_metadata`).
|
||||
"""
|
||||
if not document:
|
||||
# Skip the remote activity call entirely rather than dispatching it just to have
|
||||
# `write_prediction_metadata` decide there's nothing to write — `mlflow_response_gate`
|
||||
# and `mlflow_content_gate` don't build a `document` yet, so this is the common case
|
||||
# today, not a rare edge case (review finding, 2026-10-01).
|
||||
return None
|
||||
|
||||
try:
|
||||
return await workflow.execute_activity_method(
|
||||
Activities.write_prediction_metadata,
|
||||
{**metadata, 'documents': [document]},
|
||||
retry_policy=retry_policy,
|
||||
start_to_close_timeout=timedelta(minutes=1),
|
||||
)
|
||||
except Exception as e:
|
||||
# Business rule 1: writing metadata must never block or fail the prediction write.
|
||||
# `write_prediction_metadata` already swallows Mongo-specific failures internally and
|
||||
# returns `None`, but that protection doesn't cover the activity call itself failing
|
||||
# to run at all (its `retry_policy` has `maximum_attempts=1` — no retry — so a
|
||||
# timeout, a momentarily unavailable worker, or any other dispatch failure raises
|
||||
# straight into the workflow). Catching it here, instead of just at the Mongo client
|
||||
# level, is what actually makes the rule hold (review finding, 2026-10-01).
|
||||
workflow.logger.warning(f'Failed to write prediction metadata, continuing anyway: {e}')
|
||||
return None
|
||||
|
||||
async def path_flag_handler(
|
||||
self,
|
||||
data: dict[str, Any],
|
||||
@@ -255,6 +302,7 @@ class PredictionProcess:
|
||||
confidence: int,
|
||||
last_timestamp: str,
|
||||
comment: str,
|
||||
document: dict[str, Any] | None = None,
|
||||
) -> bool:
|
||||
"""
|
||||
Handle path decisions based on filter results and confidence levels.
|
||||
@@ -280,6 +328,13 @@ class PredictionProcess:
|
||||
confidence: Confidence level from filter validation
|
||||
last_timestamp: Last processed timestamp
|
||||
comment: Additional information about the filter result
|
||||
document: Metadata describing the filter(s) that produced `path_flag`, as returned by
|
||||
the gate (`None` when nothing was filtered, or when the gate that produced this
|
||||
`path_flag` doesn't build one yet). Written via `write_prediction_metadata` for
|
||||
`CONTINUE` and `REPEAT` alike — both persist a `predictions` row (`REPEAT` reuses
|
||||
the previous row's values but still inserts a new one), so both can reference the
|
||||
resulting `metadata_id`; `STOP` never reaches a write at all, so its `document` is
|
||||
simply never used here.
|
||||
|
||||
Returns:
|
||||
bool: True if processing should stop, False to continue
|
||||
@@ -304,7 +359,10 @@ class PredictionProcess:
|
||||
# Stop processing and exit workflow
|
||||
return True
|
||||
elif path_flag == 'REPEAT':
|
||||
# Repeat last prediction if available
|
||||
metadata_id = await self._write_prediction_metadata(metadata, document)
|
||||
# Repeat last prediction, copying the previous row's values forward with a new
|
||||
# timestamp. `repeat_last_prediction` now lives in `Storage` (laborious), not the
|
||||
# shared library — its INSERT...SELECT references `metadata_id` directly.
|
||||
await workflow.execute_activity_method(
|
||||
Activities.repeat_last_prediction,
|
||||
{
|
||||
@@ -313,12 +371,14 @@ class PredictionProcess:
|
||||
'table_name': table_name,
|
||||
'model': model_id,
|
||||
'last_timestamp': last_timestamp,
|
||||
'metadata_id': metadata_id,
|
||||
},
|
||||
retry_policy=retry_policy,
|
||||
start_to_close_timeout=timedelta(minutes=1),
|
||||
)
|
||||
return True
|
||||
elif path_flag == 'CONTINUE':
|
||||
metadata_id = await self._write_prediction_metadata(metadata, document)
|
||||
# call write workflow
|
||||
await workflow.execute_child_workflow(
|
||||
'subworkflow.format_and_export_prediction',
|
||||
@@ -335,6 +395,7 @@ class PredictionProcess:
|
||||
'table_name': table_name,
|
||||
'transform_table_name': transform_table_name,
|
||||
'comment': comment,
|
||||
'metadata_id': metadata_id,
|
||||
'opc_output_config': input_data['opc_output_config'],
|
||||
'pi_web_api_output_config': input_data['pi_web_api_output_config'],
|
||||
'prediction_store_policy': input_data['prediction_store_policy'],
|
||||
|
||||
Reference in New Issue
Block a user