Update environment configuration and refactor activities to include metrics controller. Remove Kafka settings and adjust Redis and MongoDB initialization. Update tests to reflect changes in initialization and metrics tracking.
315 lines
11 KiB
Python
315 lines
11 KiB
Python
from collections.abc import Hashable
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from sientia_do.observability.metrics_controller import MetricsController
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from temporalio import activity, workflow
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with workflow.unsafe.imports_passed_through():
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import traceback
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from typing import Any
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from pandas import DataFrame
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from sientia_do.notifications.handlers import NotificationHandler
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from sientia_do.notifications.models import NotificationLevel
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from sientia_do.observability.logger import Logger
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from sientia_do.observability.sientia_monitoring import SientiaMonitoring
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from scouter import metrics
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from scouter.utils.quality.filters import null_values_filter, out_of_bounds_filter
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quality_gate_filters = {
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'NULL_VALUES_FILTER': null_values_filter,
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'OUT_OF_BOUNDS_FILTER': out_of_bounds_filter,
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}
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class Gates(SientiaMonitoring):
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"""
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Data quality gates and filtering operations.
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This class implements data quality validation and filtering for industrial
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time-series data. It provides:
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- Configurable data quality filters
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- Data aggregation functions for time-series data
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- Comprehensive error handling and notification
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- Metrics collection for quality monitoring
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The class supports multiple aggregation strategies and quality filters to
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ensure data integrity and enable flexible data processing workflows.
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"""
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def __init__(self, logger: Logger, notification_handler: NotificationHandler, metrics_controller: MetricsController):
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"""
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Initialize the Gates class with logging and notification services.
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Args:
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logger (Logger): Logger instance for operation logging
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notification_handler (NotificationHandler): Handler for system notifications
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metrics_controller (MetricsController): Metrics controller instance
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"""
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SientiaMonitoring.__init__(self, logger, notification_handler, metrics_controller)
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def close(self):
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"""
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Close the Gates class.
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"""
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SientiaMonitoring.shutdown(self)
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def apply_aggregation(
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self, values: DataFrame, aggr_function: str, metadata: dict[str, Any]
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) -> float | None | str:
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"""
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Apply aggregation function to a group of time-series data.
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This method applies the specified aggregation function to a group of
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data points. It handles edge cases and provides comprehensive error
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reporting for invalid aggregation functions.
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Args:
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values (DataFrame): Group of data points to aggregate (pre-sorted by timestamp)
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aggr_function (str): Aggregation function to apply.
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Supported functions: 'lts' (latest), 'avg' (average), 'mdn' (median),
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'max' (maximum), 'min' (minimum)
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metadata (dict[str, Any]): Workflow metadata for error reporting
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Returns:
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float | None | str: Aggregated value, None if no valid data, or 'continue' for errors
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Raises:
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NotificationError: If invalid aggregation function is specified
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"""
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# Fast path for single value
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if len(values) == 1:
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return values['value'].iloc[0]
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if aggr_function == 'lts':
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return values['value'].iloc[-1]
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# Remove NaN values without inplace operation
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clean_values = values['value'].dropna()
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if clean_values.empty:
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return None
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# Use dictionary lookup for aggregation functions (faster than if-elif chain)
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aggregation_map = {
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'avg': lambda x: x.mean(),
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'mdn': lambda x: x.median(),
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'max': lambda x: x.max(),
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'min': lambda x: x.min(),
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}
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if aggr_function in aggregation_map:
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return aggregation_map[aggr_function](clean_values)
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else:
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self.send_notification(
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metadata=metadata,
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notification_id='AGGREGATION_ISSUES',
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message=f'Invalid aggregation function: {aggr_function}',
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block='aggregate_data',
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level=NotificationLevel.ERROR,
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attachment_content=traceback.format_exc(),
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)
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return 'continue'
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@activity.defn(name='aggregate_data')
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async def aggregate_data(self, input_data: dict[str, Any]) -> dict[Hashable, Any]:
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"""
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Aggregate time-series data by tag and name using specified functions.
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This activity processes time-series data by grouping it by tag and name,
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then applying the configured aggregation functions. It handles data
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validation and provides comprehensive error reporting.
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Args:
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input_data (dict[str, Any]): Activity input parameters.
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Required fields:
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- data (dict[str, Any]): Time-series data to aggregate
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- model_tags (dict[str, Any]): Tag configuration with aggregation functions
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Returns:
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dict[Hashable, Any]: Aggregated data organized by tag and name
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Raises:
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Exception: If aggregation operation fails
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"""
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metadata = input_data['metadata']
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try:
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# Convert input data to DataFrame
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df = DataFrame(input_data['data'])
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self.info(f'Aggregating time series data for {len(df)} rows', metadata=metadata)
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# Sort once by timestamp for all data (more efficient than sorting each group)
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df = df.sort_values(['tag', 'name', 'timestamp'])
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# Group by tag and name
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# sort=False since we already sorted
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grouped = df.groupby(['tag', 'name'], sort=False)
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# Prepare aggregation functions mapping
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model_tags = input_data['model_tags']
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# Process groups efficiently
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results = []
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for (tag, name), group in grouped:
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# Get the aggregation function from model_tags
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aggr_function = model_tags.get(name, {}).get('aggr_func', 'lts')
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# Get the latest timestamp (last row since data is sorted)
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latest_timestamp = group['timestamp'].iloc[-1]
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aggr_value = self.apply_aggregation(group, aggr_function, metadata)
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if aggr_value == 'continue':
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continue
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# Store the result directly in list for better performance
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results.append(
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{
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'tag': tag,
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'name': name,
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'value': aggr_value,
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'timestamp': latest_timestamp,
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'aggregation_function': aggr_function,
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}
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)
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self.info(f'Aggregated data has {len(results)} rows', metadata=metadata)
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# Convert to DataFrame only once at the end if we have results
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if results:
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result_df = DataFrame(results)
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self.debug(f'Final aggregated data:\n{result_df.to_string()}', metadata=metadata)
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return result_df.to_dict()
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else:
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# Return empty DataFrame dict structure
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return DataFrame().to_dict()
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except Exception as e:
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trace = traceback.format_exc()
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self.send_notification(
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metadata=metadata,
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notification_id='AGGREGATION_ISSUES',
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message=f'Error aggregating data: {e}',
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block='aggregate_data',
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level=NotificationLevel.ERROR,
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attachment_content=trace,
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)
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self.error(trace, metadata=metadata)
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raise e
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@activity.defn(name='data_quality_gate')
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async def data_quality_gate(self, input_data: dict[str, Any]) -> dict[Hashable, Any]:
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"""
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Apply data quality filters to incoming data.
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This activity applies configurable quality filters to validate incoming
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data. It supports multiple filter types and provides comprehensive
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error reporting for quality issues.
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Args:
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input_data (dict[str, Any]): Activity input parameters.
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Required fields:
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- data (dict[str, Any]): Data to validate
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- filters (dict[str, str]): Filter configuration
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- model_tags (dict[str, Any]): Tag-specific validation rules
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Returns:
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dict[Hashable, Any]: Filtered data that passes quality validation
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Raises:
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Exception: If quality validation fails
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"""
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metadata = input_data['metadata']
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filters = input_data['filters']
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data = DataFrame(input_data['data'])
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model_tags = input_data['model_tags']
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self.info(f'Applying quality gate to data to {len(data)} rows', metadata=metadata)
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tags = list(model_tags.keys())
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data = data[data['name'].isin(tags)]
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for filter_name, config in filters.items():
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policy = config['policy']
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if filter_name not in quality_gate_filters:
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self.warning(f'Filter {filter_name} not found', metadata=metadata)
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continue
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try:
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filtered_data = quality_gate_filters[filter_name](data, model_tags)
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except Exception as e:
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trace = traceback.format_exc()
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self.send_notification(
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metadata=metadata,
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notification_id='DATA_QUALITY_GATE_ISSUES',
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message=f'Error applying filter {filter_name}: {e}',
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block='data_quality_gate',
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level=NotificationLevel.ERROR,
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attachment_content=trace,
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)
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self.error(trace, metadata=metadata)
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else:
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if filtered_data.empty:
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continue
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message = f'{len(filtered_data)} rows has quality issues: {filter_name}: {policy}'
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attachment = filtered_data.to_string()
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self.send_notification(
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metadata=metadata,
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notification_id=f'DATA_QUALITY_GATE_ISSUES__{filter_name}',
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message=message,
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block='data_quality_gate',
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level=NotificationLevel.WARNING,
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attachment_content=attachment,
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)
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if policy == 'DISCARD':
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data = data[~data.index.isin(filtered_data.index)]
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self.info(f'Data quality gate applied, final data has {len(data)} rows', metadata=metadata)
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return data.to_dict()
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@activity.defn(name='write_metrics')
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async def write_metrics(self, input_data: dict[str, Any]) -> None:
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"""
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Write metrics to the database.
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input_data:
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metadata: dict[str, Any]
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"""
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metadata = input_data['metadata']
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tag_values = DataFrame(input_data['tag_values'])
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self.info(f'Writing metrics for {metadata["model_name"]}', metadata=metadata)
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metrics.LABORIOUS_DATA_WRITTEN_COUNT.labels(
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pod_id=self.pod_id,
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model_name=metadata['model_name'],
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pipeline_name=metadata['workflow_name'],
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).inc()
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# Register metrics
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for _, row in tag_values.iterrows():
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metrics.TAG_CHANGES_MONITOR.labels(
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pod_id=self.pod_id,
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model_name=metadata['model_name'],
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pipeline_name=metadata['workflow_name'],
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tag_name=row['variable'],
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).set(row['value'])
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self.info(f'Metrics written for {metadata["model_name"]}', metadata=metadata)
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