SIENTIAPDE-1243: Refactor and enhance model manager activities and workflows
This commit includes several changes: - Reorganized imports and class inheritance in activities.py, gates.py and mlflow.py for better readability and maintainability. - Improved error handling and logging in gates.py and mlflow.py. - Added input validation and filtering in gates.py to ensure data quality. - Enhanced prediction formatting and storage policy management in gates.py. - Updated metrics.py to use consistent naming conventions and labels. - Refactored connectors_config.py to use type hints and improve code clarity. - Updated conditional and MLFlow filters for better data quality checks. - Improved model repository logic for retraining and updating models. - Enhanced worker.py to include SDK metrics and improved error handling. - Refactored workflows for better modularity and error handling. - Updated tests to reflect the changes and improve test coverage.
This commit is contained in:
@@ -1,53 +1,42 @@
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from temporalio import activity, workflow
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with workflow.unsafe.imports_passed_through():
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import traceback
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from typing import Any
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from pandas import DataFrame
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from sientia_do.formatters import create_sample_dict
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from sientia_do.notifications.handlers import CoreNotificationHandler as NotificationHandler
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from sientia_do.notifications.models import NotificationLevel
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from sientia_do.temporal.activities.base import BaseActivity
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from sientia_do.observability.logger import Logger
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from sientia_do.temporal.activities.base import BaseActivity
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from sientia_do.temporal.constants import DATETIME_FORMAT_WITH_TZ, now
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from sientia_do.formatters import create_sample_dict
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from model_manager.utils.filters.mlflow_filters import nan_values_filter, api_error_filter
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from model_manager import metrics
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from model_manager.utils.filters.conditional_filters import (
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filter_empty_data,
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filter_specific_variables_null_values
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filter_specific_variables_null_values,
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)
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from pandas import DataFrame
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from model_manager import metrics
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from model_manager.utils.filters.mlflow_filters import api_error_filter, nan_values_filter
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# Input filter function mappings
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input_filter_functions = {
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'SPECIFIC_VARIABLES_NULL_VALUES': filter_specific_variables_null_values,
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'EMPTY_DATA': filter_empty_data,
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'path_confidence': {
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'STOP': -1,
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'CONTINUE': 2,
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'REPEAT': -1
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}
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'path_confidence': {'STOP': -1, 'CONTINUE': 2, 'REPEAT': -1},
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}
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# MLFlow response filter function mappings
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mlflow_response_filter_functions = {
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'API_ERROR': api_error_filter,
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'path_confidence': {
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'STOP': -1,
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'CONTINUE': 10,
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'REPEAT': -1
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},
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'path_confidence': {'STOP': -1, 'CONTINUE': 10, 'REPEAT': -1},
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}
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# MLFlow content filter function mappings
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mlflow_content_filter_functions = {
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'NAN_VALUES': nan_values_filter,
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'EMPTY_DATA': filter_empty_data,
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'path_confidence': {
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'STOP': -1,
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'CONTINUE': 18,
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'REPEAT': -1
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}
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'path_confidence': {'STOP': -1, 'CONTINUE': 18, 'REPEAT': -1},
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}
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@@ -82,10 +71,9 @@ class Gates(BaseActivity):
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Raises:
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Exception: If BaseActivity initialization fails
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"""
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BaseActivity.__init__(
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self, logger, notification_handler, set_error_counter=True)
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BaseActivity.__init__(self, logger, notification_handler, set_error_counter=True)
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@activity.defn(name="input_gate")
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@activity.defn(name='input_gate')
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async def input_gate(self, input_data: dict[str, Any]) -> tuple[str | None, int, str]:
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"""
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Apply input data quality filters and validation.
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@@ -121,7 +109,7 @@ class Gates(BaseActivity):
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"""
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metadata = input_data['metadata']
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self.info("Performing input gate...", metadata)
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self.info('Performing input gate...', metadata)
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filters = input_data['filters']
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data = DataFrame(input_data['data'])
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@@ -129,40 +117,42 @@ class Gates(BaseActivity):
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filter_output = []
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self.debug(f"Input data: {data.head(5).to_string()}", metadata)
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self.debug(f"Filters: {filters}", metadata)
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self.debug(f'Input data: {data.head(5).to_string()}', metadata)
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self.debug(f'Filters: {filters}', metadata)
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# Apply each configured filter
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for fil, config in filters.items():
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if fil not in input_filter_functions:
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self.error(f"Filter {fil} not found", metadata)
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self.error(f'Filter {fil} not found', metadata)
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continue
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try:
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if input_filter_functions[fil](data, config['config']):
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self.debug(
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f"Data not passed the input filter {fil}:{config}", metadata)
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self.debug(f'Data not passed the input filter {fil}:{config}', metadata)
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filter_output.append(config['policy'])
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except Exception as e:
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except Exception as e: # noqa: BLE001
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trace = traceback.format_exc()
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self.send_notification(
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metadata=metadata,
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notification_id=f"INTPUT_GATE_ERROR__{fil}",
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message=f"Error in filter {fil}:{config}: \n {e}",
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block="input_gate",
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notification_id=f'INTPUT_GATE_ERROR__{fil}',
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message=f'Error in filter {fil}:{config}: \n {e}',
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block='input_gate',
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level=NotificationLevel.ERROR,
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attachment_content=trace
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attachment_content=trace,
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)
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for path_flag in path_priority:
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if path_flag in filter_output:
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self.info(f"Input gate result: {path_flag}", metadata)
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return path_flag, input_filter_functions['path_confidence'][path_flag], \
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"Input data with bad quality"
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self.info(f'Input gate result: {path_flag}', metadata)
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return (
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path_flag,
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input_filter_functions['path_confidence'][path_flag],
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'Input data with bad quality',
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)
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self.info("Nothing was filtered by the input gate", metadata)
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return None, 0, ""
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self.info('Nothing was filtered by the input gate', metadata)
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return None, 0, ''
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@activity.defn(name="mlflow_response_gate")
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@activity.defn(name='mlflow_response_gate')
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async def mlflow_response_gate(self, input_data: dict[str, Any]) -> tuple[str | None, int, str]:
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"""
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Validate MLFlow API response quality and integrity.
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@@ -197,7 +187,7 @@ class Gates(BaseActivity):
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Exception: If response validation fails or configuration is invalid
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"""
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metadata = input_data['metadata']
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self.info("Performing mlflow response gate...", metadata)
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self.info('Performing mlflow response gate...', metadata)
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filters = input_data['filters']
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data = input_data['data']
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@@ -206,14 +196,13 @@ class Gates(BaseActivity):
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filter_output = []
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self.debug(
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f"Input data: \n {create_sample_dict(data, max_items=5, max_depth=2)}", metadata)
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self.debug(f"Filters: {filters}", metadata)
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self.debug(f'Input data: \n {create_sample_dict(data, max_items=5, max_depth=2)}', metadata)
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self.debug(f'Filters: {filters}', metadata)
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comments = []
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for fil, config in filters.items():
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if fil not in mlflow_response_filter_functions:
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self.error(f"Filter {fil} not found", metadata)
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self.error(f'Filter {fil} not found', metadata)
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continue
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try:
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if mlflow_response_filter_functions[fil](data, config):
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@@ -221,34 +210,36 @@ class Gates(BaseActivity):
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comments.append(data['content']['message'])
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self.send_notification(
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metadata=metadata,
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notification_id=f"{gate_type.upper()}_GATE_RESPONSE_FILTER__{fil}",
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notification_id=f'{gate_type.upper()}_GATE_RESPONSE_FILTER__{fil}',
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message=data['content']['message'],
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block="mlflow_gate",
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block='mlflow_gate',
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level=NotificationLevel.ERROR,
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attachment_content=data['content']['traceback']
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attachment_content=data['content']['traceback'],
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)
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except Exception as e:
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except Exception as e: # noqa: BLE001
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trace = traceback.format_exc()
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self.send_notification(
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metadata=metadata,
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notification_id=f"MLFLOW_GATE_RESPONSE_FILTER__{fil}",
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message=f"Error in filter {fil}:{config}: \n {e}",
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block="mlflow_gate",
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notification_id=f'MLFLOW_GATE_RESPONSE_FILTER__{fil}',
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message=f'Error in filter {fil}:{config}: \n {e}',
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block='mlflow_gate',
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level=NotificationLevel.ERROR,
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attachment_content=trace
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attachment_content=trace,
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)
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for path_flag in path_priority:
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if path_flag in filter_output:
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self.info(
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f"Mlflow response gate result: {path_flag}", metadata)
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return path_flag, mlflow_response_filter_functions['path_confidence'][path_flag], \
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", ".join(comments)
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self.info(f'Mlflow response gate result: {path_flag}', metadata)
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return (
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path_flag,
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mlflow_response_filter_functions['path_confidence'][path_flag],
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', '.join(comments),
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)
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self.info("Nothing was filtered by the mlflow response gate", metadata)
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return None, 0, ""
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self.info('Nothing was filtered by the mlflow response gate', metadata)
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return None, 0, ''
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@activity.defn(name="mlflow_content_gate")
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@activity.defn(name='mlflow_content_gate')
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async def mlflow_content_gate(self, input_data: dict[str, Any]) -> tuple[str | None, int, str]:
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"""
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Validate MLFlow prediction content quality and integrity.
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@@ -283,7 +274,7 @@ class Gates(BaseActivity):
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Exception: If content validation fails or configuration is invalid
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"""
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metadata = input_data['metadata']
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self.info("Performing mlflow content gate...", metadata)
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self.info('Performing mlflow content gate...', metadata)
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filters = input_data['filters']
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data = DataFrame(input_data['data'])
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@@ -292,8 +283,8 @@ class Gates(BaseActivity):
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filter_output = []
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self.debug(f"Input data:\n {data.head(5).to_string()}", metadata)
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self.debug(f"Filters: \n {create_sample_dict(filters)}", metadata)
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self.debug(f'Input data:\n {data.head(5).to_string()}', metadata)
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self.debug(f'Filters: \n {create_sample_dict(filters)}', metadata)
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for fil, config in filters.items():
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if fil not in mlflow_content_filter_functions:
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@@ -303,36 +294,38 @@ class Gates(BaseActivity):
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filter_output.append(config['policy'])
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self.send_notification(
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metadata=metadata,
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notification_id=f"{gate_type.upper()}_GATE_CONTENT_FILTER__{fil}",
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message=f"Data not passed the content filter {fil}:{config}",
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block="mlflow_gate",
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notification_id=f'{gate_type.upper()}_GATE_CONTENT_FILTER__{fil}',
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message=f'Data not passed the content filter {fil}:{config}',
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block='mlflow_gate',
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level=NotificationLevel.WARNING,
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attachment_content=data.to_string()
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attachment_content=data.to_string(),
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)
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except Exception as e:
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except Exception as e: # noqa: BLE001
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trace = traceback.format_exc()
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self.send_notification(
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metadata=metadata,
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notification_id=f"MLFLOW_GATE_CONTENT_FILTER__{fil}",
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message=f"Error in filter {fil}:{config}: \n {e}",
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block="mlflow_gate",
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notification_id=f'MLFLOW_GATE_CONTENT_FILTER__{fil}',
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message=f'Error in filter {fil}:{config}: \n {e}',
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block='mlflow_gate',
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level=NotificationLevel.ERROR,
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attachment_content=trace
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attachment_content=trace,
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)
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for path_flag in path_priority:
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if path_flag in filter_output:
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self.info(
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f"Mlflow content gate result: {path_flag}", metadata)
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return path_flag, mlflow_content_filter_functions['path_confidence'][path_flag], \
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"Transformed data not passed the content filter"
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self.info(f'Mlflow content gate result: {path_flag}', metadata)
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return (
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path_flag,
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mlflow_content_filter_functions['path_confidence'][path_flag],
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'Transformed data not passed the content filter',
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)
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self.info("Nothing was filtered by the mlflow content gate", metadata)
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return None, 0, ""
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self.info('Nothing was filtered by the mlflow content gate', metadata)
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return None, 0, ''
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def get_prediction_store_policy(self,
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prediction_store_policy: str,
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metadata: dict[str, Any]) -> tuple[str, int]:
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def get_prediction_store_policy(
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self, prediction_store_policy: str, metadata: dict[str, Any]
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) -> tuple[str, int]:
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"""
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Parse and validate prediction store policy configuration.
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@@ -358,7 +351,9 @@ class Gates(BaseActivity):
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if len(policy_elements) < 2:
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self.error(
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f"Invalid prediction store policy: {prediction_store_policy}, using default policy", metadata)
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f'Invalid prediction store policy: {prediction_store_policy}, using default policy',
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metadata,
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)
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return 'lts', 1
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policy_type = policy_elements[0]
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@@ -366,14 +361,20 @@ class Gates(BaseActivity):
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# If the policy_type is not lts or erl, we use the default policy
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# If the policty_value is not a number or 0, we use the default policy
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if policy_type not in ['lts', 'erl'] or not policy_value.isdigit() or int(policy_value) == 0:
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if (
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policy_type not in ['lts', 'erl']
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or not policy_value.isdigit()
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or int(policy_value) == 0
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):
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self.error(
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f"Invalid prediction store policy: {prediction_store_policy}, using default policy", metadata)
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f'Invalid prediction store policy: {prediction_store_policy}, using default policy',
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metadata,
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)
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return 'lts', 1
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return policy_type, int(policy_value)
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@activity.defn(name="format_prediction")
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@activity.defn(name='format_prediction')
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async def format_prediction(self, input_data: dict[str, Any]) -> dict[Any, Any]:
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"""
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Format prediction data according to configured storage policies.
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@@ -400,7 +401,7 @@ class Gates(BaseActivity):
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"""
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metadata = input_data['metadata']
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prediction_store_policy = input_data['prediction_store_policy']
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self.info("Formatting prediction...", metadata)
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self.info('Formatting prediction...', metadata)
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data = DataFrame(input_data['data'])
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@@ -408,48 +409,45 @@ class Gates(BaseActivity):
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data['timestamp'] = data.index
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data = data.reset_index(drop=True)
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self.debug(
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f"Prediction store policy: {prediction_store_policy}", metadata)
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self.debug(f"Prediction data: {data.head(5).to_string()}", metadata)
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self.debug(f'Prediction store policy: {prediction_store_policy}', metadata)
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self.debug(f'Prediction data: {data.head(5).to_string()}', metadata)
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policy_type, policy_value = self.get_prediction_store_policy(
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prediction_store_policy, metadata)
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prediction_store_policy, metadata
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)
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# If data has no timestamp, we use the default timestamp and not sort the data
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self.info(
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f"Sorting data by timestamp and applying policy: {policy_type}:{policy_value}", metadata)
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f'Sorting data by timestamp and applying policy: {policy_type}:{policy_value}', metadata
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)
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# If policy_type is lts, we need to sort the data by timestamp descending and take the first policy_value rows
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if policy_type == 'lts':
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self.debug(
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"Sorting data by timestamp descending", metadata)
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self.debug('Sorting data by timestamp descending', metadata)
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data = data.sort_values(by='timestamp', ascending=False)
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# If policy_type is erl, we need to sort the data by timestamp ascending and take the first policy_value rows
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elif policy_type == 'erl':
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self.debug(
|
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"Sorting data by timestamp ascending", metadata)
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self.debug('Sorting data by timestamp ascending', metadata)
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data = data.sort_values(by='timestamp', ascending=True)
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else:
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self.error(
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f"Invalid policy type: {policy_type}, using default policy", metadata)
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raise ValueError(
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f"Invalid policy type: {policy_type}")
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self.error(f'Invalid policy type: {policy_type}, using default policy', metadata)
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raise ValueError(f'Invalid policy type: {policy_type}')
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data = data.head(int(policy_value))
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data['model_id'] = input_data['model_id']
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data['prediction_confidence'] = input_data['prediction_confidence']
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data['prediction_status'] = 'Good'
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data['comments'] = ""
|
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data['comments'] = ''
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data = data.sort_values(by='timestamp', ascending=False)
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data = data.reset_index(drop=True)
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|
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self.info(f"Prediction formatted: {len(data)} rows", metadata)
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self.debug(f"Prediction data: {data.head(5).to_string()}", metadata)
|
||||
self.info(f'Prediction formatted: {len(data)} rows', metadata)
|
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self.debug(f'Prediction data: {data.head(5).to_string()}', metadata)
|
||||
|
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return data.to_dict()
|
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|
||||
@activity.defn(name="format_default_prediction")
|
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@activity.defn(name='format_default_prediction')
|
||||
async def format_default_prediction(self, input_data: dict[str, Any]) -> dict[Any, Any]:
|
||||
"""
|
||||
Create and format default prediction data for error conditions.
|
||||
@@ -477,22 +475,24 @@ class Gates(BaseActivity):
|
||||
"""
|
||||
|
||||
metadata = input_data['metadata']
|
||||
self.debug("Formatting default prediction...", metadata)
|
||||
self.debug('Formatting default prediction...', metadata)
|
||||
|
||||
data = DataFrame({
|
||||
'prediction': [0],
|
||||
'response_time': [0],
|
||||
'timestamp': [input_data['timestamp']],
|
||||
'model_id': [input_data['model_id']],
|
||||
'prediction_confidence': [input_data['prediction_confidence']],
|
||||
'prediction_status': ['Bad'],
|
||||
'comments': [input_data['comment']]
|
||||
})
|
||||
data = DataFrame(
|
||||
{
|
||||
'prediction': [0],
|
||||
'response_time': [0],
|
||||
'timestamp': [input_data['timestamp']],
|
||||
'model_id': [input_data['model_id']],
|
||||
'prediction_confidence': [input_data['prediction_confidence']],
|
||||
'prediction_status': ['Bad'],
|
||||
'comments': [input_data['comment']],
|
||||
}
|
||||
)
|
||||
|
||||
self.info(f"Default prediction formatted: {data.size} rows", metadata)
|
||||
self.info(f'Default prediction formatted: {data.size} rows', metadata)
|
||||
return data.to_dict()
|
||||
|
||||
@activity.defn(name="get_last_timestamp")
|
||||
@activity.defn(name='get_last_timestamp')
|
||||
async def get_last_timestamp(self, input_data: dict[str, Any]) -> str:
|
||||
"""
|
||||
Extract the most recent timestamp from prediction data.
|
||||
@@ -517,24 +517,22 @@ class Gates(BaseActivity):
|
||||
"""
|
||||
metadata = input_data['metadata']
|
||||
|
||||
self.info("Getting last timestamp...", metadata)
|
||||
self.info('Getting last timestamp...', metadata)
|
||||
|
||||
data = DataFrame(input_data['data'])
|
||||
|
||||
self.debug(f"Input data: {data.head(5).to_string()}", metadata)
|
||||
self.debug(f'Input data: {data.head(5).to_string()}', metadata)
|
||||
|
||||
if data.empty:
|
||||
return now().strftime(DATETIME_FORMAT_WITH_TZ)
|
||||
|
||||
max_timestamp = max(
|
||||
data['timestamp'].values.tolist())
|
||||
max_timestamp = max(data['timestamp'].values.tolist())
|
||||
|
||||
self.info(
|
||||
f"Last timestamp: {max_timestamp}", metadata)
|
||||
self.info(f'Last timestamp: {max_timestamp}', metadata)
|
||||
|
||||
return max_timestamp
|
||||
|
||||
@activity.defn(name="write_metrics")
|
||||
@activity.defn(name='write_metrics')
|
||||
async def write_metrics(self, input_data: dict[str, Any]):
|
||||
"""
|
||||
Write prediction performance metrics to Prometheus monitoring system.
|
||||
@@ -562,26 +560,24 @@ class Gates(BaseActivity):
|
||||
prediction_confidence = prediction['prediction_confidence'].values[0]
|
||||
response_time = prediction['response_time'].values[0]
|
||||
|
||||
self.info(
|
||||
f"Writing metrics for model {metadata['model_name']}", metadata)
|
||||
self.info(f'Writing metrics for model {metadata["model_name"]}', metadata)
|
||||
|
||||
metrics.PREDICTIONS_WRITTEN_COUNT.labels(
|
||||
pod_id=self.pod_id,
|
||||
model_name=metadata['model_name'],
|
||||
pipeline_name=metadata['workflow_name']
|
||||
pipeline_name=metadata['workflow_name'],
|
||||
).inc()
|
||||
|
||||
metrics.PREDICTION_CONFIDENCE_MONITOR.labels(
|
||||
pod_id=self.pod_id,
|
||||
model_name=metadata['model_name'],
|
||||
pipeline_name=metadata['workflow_name']
|
||||
pipeline_name=metadata['workflow_name'],
|
||||
).set(prediction_confidence)
|
||||
|
||||
metrics.PREDICTION_RESPONSE_TIME_MONITOR.labels(
|
||||
pod_id=self.pod_id,
|
||||
model_name=metadata['model_name'],
|
||||
pipeline_name=metadata['workflow_name']
|
||||
pipeline_name=metadata['workflow_name'],
|
||||
).observe(response_time)
|
||||
|
||||
self.info(
|
||||
f"Metrics written for model {metadata['model_name']}", metadata)
|
||||
self.info(f'Metrics written for model {metadata["model_name"]}', metadata)
|
||||
|
||||
Reference in New Issue
Block a user