10 Commits

Author SHA1 Message Date
github-actions[bot]
b5a54147f5 chore: bump version to 0.9.0
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2026-09-29 15:33:26 +00:00
ci-dependencies-fetcher[bot]
150e2f7259 Revert "chore: bump version to 0.8.0"
This reverts commit e5cea1ef96.
2026-09-29 14:22:49 +00:00
github-actions[bot]
e5cea1ef96 chore: bump version to 0.8.0 2026-09-29 14:22:15 +00:00
Carla Fernandes
08b2986f81 Merge pull request #53 from Aignosi/feature/SIENTIAPDE-2162
feature/SIENTIAPDE-2162 Prediction Metadata — Collection prediction_metadata no MongoDB
2026-09-29 16:21:48 +02:00
Carla Pinto
8b69b2cb29 feature/SIENTIAPDE-2162 - Inject mongo_repository into gates and add best-effort prediction metadata write 2026-09-28 19:33:24 +02:00
9920cd61c2 SIENTIAPDE-1646
Add tests for retrain, drift, storage, OPC repo, worker paths

- covers csv lookup fallback, drift insufficient-data passthrough,
  timestamp tz normalization, storage close without engine, OPC
  watchdog/write_value fallbacks and reconnect reporting, and
  legacy runtime install in worker main
2026-09-28 11:53:01 -03:00
d27f6573fe SIENTIAPDE-1646
Simplify merge in retrain: expose timestamp explicitly for join

Refactor evaluation_data merge to reset both frames' index into a
"timestamp" column before joining, instead of merging on index then
copying it out afterward. Same validate='one_to_one' safety check,
fewer intermediate steps.
2026-09-25 12:45:19 -03:00
f323da7b56 SIENTIAPDE-1646
Harden retrain merge and OPC write against silent failures

- pandas merge now uses validate='one_to_one' so duplicated timestamps
  from wrapper.retrain fail loudly instead of silently multiplying rows
- OPC write_data raises OpcClientNotInitializedError instead of a bare
  assert when client is torn down between validation and write, so
  callers get a reported error instead of an AssertionError
- add regression test covering the torn-down client path

Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>
2026-09-25 12:27:17 -03:00
5c3c9292fc SIENTIAPDE-1646
Fix flaky shutdown assertions in test suite

GC-collected instances during tests also invoke patched shutdown,
making assert_called_once_with flaky. Count calls for this instance
specifically instead of asserting total call count.
2026-09-25 12:10:18 -03:00
9fb81ef556 SIENTIAPDE-1646
Pin sqlalchemy<2.1 to fix psycopg driver break; use tmp_path in retrain

- sqlalchemy 2.1 defaults postgresql:// URLs to psycopg (v3), but sientia_do
  only ships psycopg2-binary, breaking with "No module named psycopg"
- Replace hardcoded 'tmp' mkdtemp mock with pytest tmp_path fixture in
  retrain_model tests to avoid writing to a fake path
2026-09-25 11:58:55 -03:00
16 changed files with 504 additions and 32 deletions

View File

@@ -29,6 +29,7 @@ from laborious.workflows.sub_workflows.prediction_process import PredictionProce
from sientia_do.notifications.handlers import CoreNotificationHandler
from sientia_do.observability.logger import Logger
from sientia_do.observability.metrics_controller import MetricsController
from sientia_do.repository.mongodb_repository_sync import MongoDBRepository
# Single source of truth for the test database schema. Mirrors the production
# DDL for ``sientia_data`` so any production change can be pasted directly into
@@ -141,6 +142,24 @@ def notification_inserts(notification_handler):
collection.insert_one = original_insert_one
@pytest_asyncio.fixture
def mongo_repository(mock_logger, notification_handler, metrics_controller, mongo_container):
"""Real MongoDBRepository for gate metadata (prediction_metadata), same testcontainer as
``notification_handler`` above."""
mongo_port = mongo_container.get_exposed_port(27017)
repository = MongoDBRepository(
connection_string=f'mongodb://localhost:{mongo_port}',
database_name='test_db',
logger=mock_logger,
notification_handler=notification_handler,
metrics_controller=metrics_controller,
)
try:
yield repository
finally:
repository.close()
class _FakeModelWrapper:
"""External MLflow wrapper double used by repository stub."""
@@ -233,6 +252,7 @@ async def test_activities(
plugin_store_stub,
pi_web_api_client_stub,
opc_repository_stub,
mongo_repository,
):
"""Activities with real infra and external-system stubs only."""
minio_client = minio_container.get_client()
@@ -269,6 +289,7 @@ async def test_activities(
notification_handler=notification_handler,
metrics_controller=metrics_controller,
mlflow_repository=mlflow_repository_stub,
mongo_repository=mongo_repository,
)
activities.pi_web_api_client = pi_web_api_client_stub
activities.opc_repository = {'1': opc_repository_stub}
@@ -289,6 +310,7 @@ async def test_activities_real_minio(
plugin_store_stub,
pi_web_api_client_stub,
opc_repository_stub,
mongo_repository,
):
"""Compatibility alias for offload tests."""
minio_client = minio_container.get_client()
@@ -325,6 +347,7 @@ async def test_activities_real_minio(
notification_handler=notification_handler,
metrics_controller=metrics_controller,
mlflow_repository=mlflow_repository_stub,
mongo_repository=mongo_repository,
)
activities.pi_web_api_client = pi_web_api_client_stub
activities.opc_repository = {'1': opc_repository_stub}
@@ -535,6 +558,7 @@ async def test_activities_real_opc(
plugin_store_stub,
pi_web_api_client_stub,
opc_e2e_server: OpcE2ETestServer,
mongo_repository,
):
"""Activities with real OpcRepository connected to the in-process OPC UA server."""
minio_client = minio_container.get_client()
@@ -571,6 +595,7 @@ async def test_activities_real_opc(
notification_handler=notification_handler,
metrics_controller=metrics_controller,
mlflow_repository=mlflow_repository_stub,
mongo_repository=mongo_repository,
)
activities.pi_web_api_client = pi_web_api_client_stub
await asyncio.to_thread(_connect_activities_to_opc_server, activities, opc_e2e_server.url)

View File

@@ -7,6 +7,8 @@ with workflow.unsafe.imports_passed_through():
from sientia_do.notifications.handlers import CoreNotificationHandler as NotificationHandler
from sientia_do.observability.logger import Logger
from sientia_do.repository.minio_repository_sync import MinioRepository
from sientia_do.repository.mongodb_repository_sync import MongoDBRepository
from sientia_do.utils.connectors_config import build_mongodb_config
from sientia_model.model_repository.mlflow_repository import SientiaMLflowRepository
from sientia_model.model_repository.plugin_store import PluginStore
@@ -48,6 +50,7 @@ class Activities(Storage, MLFlow, Gates, OPC, ModelMetrics, API):
notification_handler: NotificationHandler,
metrics_controller: MetricsController | None = None,
mlflow_repository: SientiaMLflowRepository | None = None,
mongo_repository: MongoDBRepository | None = None,
):
"""
Wire Postgres, MinIO, MLflow, OPC, gates, metrics, and PI Web API into a single object.
@@ -67,6 +70,9 @@ class Activities(Storage, MLFlow, Gates, OPC, ModelMetrics, API):
- metrics_controller: Optional shared controller; if ``None``, a new one is created.
- mlflow_repository: Optional ``SientiaMLflowRepository`` for unit/e2e tests; in production
leave unset so the repository is built from environment via ``build_mlflow_config()``.
- mongo_repository: Optional ``MongoDBRepository`` (gate metadata, best-effort) for
unit/e2e tests; in production leave unset so the repository is built from environment
via ``build_mongodb_config()``, same pattern as ``mlflow_repository`` above.
Raises:
Exception: If any parent ``__init__`` fails (e.g. invalid config keys).
@@ -89,6 +95,16 @@ class Activities(Storage, MLFlow, Gates, OPC, ModelMetrics, API):
metrics_controller=mc,
)
if mongo_repository is None:
mongo_cfg = build_mongodb_config()
mongo_repository = MongoDBRepository(
connection_string=mongo_cfg['connection_string'],
database_name=mongo_cfg['database_name'],
logger=logger,
notification_handler=notification_handler,
metrics_controller=mc,
)
minio_repository = MinioRepository(
endpoint=minio_config['endpoint_url'],
access_key=minio_config['access_key'],
@@ -129,6 +145,7 @@ class Activities(Storage, MLFlow, Gates, OPC, ModelMetrics, API):
Gates.__init__(
self,
minio_repository=minio_repository,
mongo_repository=mongo_repository,
logger=logger,
notification_handler=notification_handler,
metrics_controller=mc,

View File

@@ -5,6 +5,7 @@ with workflow.unsafe.imports_passed_through():
from collections.abc import Callable, Mapping
from typing import Any
from bson import ObjectId
from pandas import DataFrame
from sientia_do.notifications.handlers import CoreNotificationHandler as NotificationHandler
from sientia_do.notifications.models import NotificationLevel
@@ -12,6 +13,7 @@ with workflow.unsafe.imports_passed_through():
from sientia_do.observability.metrics_controller import MetricsController
from sientia_do.observability.sientia_monitoring import SientiaMonitoring
from sientia_do.repository.minio_repository_sync import MinioRepository
from sientia_do.repository.mongodb_repository_sync import MongoDBRepository
from sientia_do.utils.formatters import create_sample_dict
from laborious import metrics
@@ -86,11 +88,14 @@ class Gates(SientiaMonitoring):
"""
minio_repository: MinioRepository | None = None
mongo_repository: MongoDBRepository | None = None
_MAX_DEBUG_DATAFRAME_ROWS = 100
_PREDICTION_METADATA_COLLECTION = 'prediction_metadata'
def __init__(
self,
minio_repository: MinioRepository | None = None,
mongo_repository: MongoDBRepository | None = None,
logger: Logger | None = None,
notification_handler: NotificationHandler | None = None,
metrics_controller: MetricsController | None = None,
@@ -101,11 +106,14 @@ class Gates(SientiaMonitoring):
Args:
logger: Logger instance for observability and debugging
notification_handler: Notification handler for alerts and monitoring
mongo_repository: MongoDB, where gate metadata (triggered filter, policy, counter) is
written best-effort. `None` is a valid state (see `_write_prediction_metadata`).
Raises:
Exception: If BaseActivity initialization fails
"""
self.minio_repository = minio_repository
self.mongo_repository = mongo_repository
SientiaMonitoring.__init__(
self,
logger=logger,
@@ -123,6 +131,11 @@ class Gates(SientiaMonitoring):
self.minio_repository.close()
finally:
self.minio_repository = None
if self.mongo_repository is not None:
try:
self.mongo_repository.close()
finally:
self.mongo_repository = None
SientiaMonitoring.shutdown(self)
def __del__(self):
@@ -146,6 +159,56 @@ class Gates(SientiaMonitoring):
metadata,
)
def _write_prediction_metadata(
self, document: dict[str, Any] | None, metadata: dict[str, Any]
) -> str | None:
"""
Best-effort write of gate metadata (triggered filter, policy, counter) to Mongo.
Implements both business rules for this feature in one place:
- The prediction write must never be blocked or failed by a metadata write. A failed
`insert(...)` is swallowed, never re-raised, logged here with gate-level context (which
`mongo_repository.insert(...)` itself can't know) — matching how `storage.py`'s
`cleanup_minio_objects_expired` also logs again at the call site even though the
repository already logs internally and emits its own Prometheus metric
(`MONGODB_WRITE_ERROR_COUNT`); the generic library log is for the metric/trace, this
one is for whoever is reading logs for this specific gate.
- Nothing is written when there's nothing relevant to report. A falsy `document` (e.g.
no filter triggered) skips Mongo entirely, so callers can call this unconditionally
and get `None` back for "no metadata this time" instead of deciding upfront whether
there's something worth saving.
`insert(...)` doesn't hand back the inserted document's `_id`, so it is generated here,
client-side, before the insert, as a plain string (not a BSON ObjectId) — matching this
codebase's convention of string `_id`s (e.g. the `models` collection) and the 24-hex-char
size of the `predictions.metadata_id` Postgres column that will reference it.
Args:
document: Metadata payload (filter, policy, counter, etc.); `None`/empty skips the
write entirely. No `_id` key expected.
metadata: Workflow metadata for contextual logging.
Return:
The generated id, or `None` when there's nothing to write, Mongo isn't configured, or
the insert failed.
"""
if not document or self.mongo_repository is None:
return None
generated_id = str(ObjectId())
try:
self.mongo_repository.insert(
self._PREDICTION_METADATA_COLLECTION,
{**document, '_id': generated_id},
metadata,
)
except Exception as e:
self.error(f'Failed to write prediction metadata: {e}', metadata)
return None
return generated_id
@staticmethod
def _read_filter_entry(config: dict[str, Any]) -> tuple[str, dict[str, Any]]:
"""

View File

@@ -529,22 +529,23 @@ class MLFlow(SientiaMonitoring):
)
# Keep heavy model fitting outside MLflow run timing.
prediction_data = wrapper.retrain(data)
prediction_data.rename(columns={target: 'prediction'}, inplace=True)
prediction_data = wrapper.retrain(data).rename(columns={target: 'prediction'})
# Merge prediction data with retrain data
evaluation_data = pd.merge(
data, prediction_data, left_index=True, right_index=True, how='left'
# Both frames are indexed by the pivoted timestamp: expose it as an explicit column
# and join on it. `validate` fails loudly instead of silently multiplying rows if the
# wrapper ever returns duplicated timestamps.
evaluation_data = (
data.reset_index(names='timestamp')
.merge(
prediction_data.reset_index(names='timestamp'),
on='timestamp',
how='left',
validate='one_to_one',
)
.rename(columns={target: 'target'})
.sort_values(by='timestamp', ascending=True, ignore_index=True)
)
# Rename target column to "target"
evaluation_data.rename(columns={target: 'target'}, inplace=True)
# Reset index and put as column "timestamp"
evaluation_data['timestamp'] = evaluation_data.index
evaluation_data.reset_index(drop=True, inplace=True)
evaluation_data.sort_values(by='timestamp', inplace=True, ascending=True)
run_name = f'{model_name}-retrain-{datetime.now().strftime("%Y%m%d%H%M%S")}'
with self.mlflow_repository.start_run(

View File

@@ -843,7 +843,10 @@ class OpcRepository(SientiaMonitoring):
session_id = _opc_authentication_token_str(self.client)
try:
assert self.client is not None
if self.client is None:
raise OpcClientNotInitializedError(
f'OPC client is not initialized for server {self.id}; cannot write {node}'
)
node_obj = self.client.get_node(node)
except Exception as e:
if is_reconnectable_opcua_bad(e):

View File

@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
[project]
name = "laborious"
version = "0.7.2"
version = "0.9.0"
description = "Sientia DataOps Laborious - ML Model Orchestration System"
readme = "README.md"
requires-python = ">=3.11"

View File

@@ -1,6 +1,8 @@
temporalio
psycopg2-binary
sqlalchemy
# SQLAlchemy 2.1 makes psycopg (v3) the default driver for postgresql:// URLs; sientia_do
# builds that URL and ships only psycopg2-binary, so 2.1 fails with "No module named psycopg".
sqlalchemy<2.1
asyncua==1.0.6
redis
git+ssh://git@github.com/Aignosi/sientia-dataops-library.git@1.12.2

View File

@@ -1,6 +1,8 @@
temporalio
psycopg2-binary
sqlalchemy
# SQLAlchemy 2.1 makes psycopg (v3) the default driver for postgresql:// URLs; sientia_do
# builds that URL and ships only psycopg2-binary, so 2.1 fails with "No module named psycopg".
sqlalchemy<2.1
asyncua==1.0.6
redis
sientia_do>=1.12.2

View File

@@ -47,6 +47,7 @@ def test___init__(
}
mlflow_repository = MagicMock()
mongo_repository = MagicMock()
plugin_store = MagicMock()
opc_config = {
@@ -73,6 +74,7 @@ def test___init__(
logger=logger,
notification_handler=notification_handler,
mlflow_repository=mlflow_repository,
mongo_repository=mongo_repository,
)
assert isinstance(activities, Activities)
@@ -120,6 +122,7 @@ def test___init__(
mock_gates_init.assert_called_once_with(
ANY,
minio_repository=mock_minio_repository.return_value,
mongo_repository=mongo_repository,
logger=logger,
notification_handler=notification_handler,
metrics_controller=mock_metrics_controller.return_value,
@@ -217,6 +220,7 @@ def test_shutdown(
logger=logger,
notification_handler=notification_handler,
mlflow_repository=mlflow_repository,
mongo_repository=MagicMock(),
)
activities.shutdown()
@@ -286,6 +290,7 @@ def test___init___builds_mlflow_repository_when_not_provided(
pi_web_api_config=pi_web_api_config,
logger=logger,
notification_handler=notification_handler,
mongo_repository=MagicMock(),
)
mock_build_mlflow_config.assert_called_once()
@@ -297,3 +302,83 @@ def test___init___builds_mlflow_repository_when_not_provided(
notification_handler=notification_handler,
metrics_controller=mock_metrics_controller.return_value,
)
@patch('laborious.activities.activities.MongoDBRepository')
@patch('laborious.activities.activities.build_mongodb_config')
@patch('laborious.activities.activities.Storage.__init__')
@patch('laborious.activities.activities.MLFlow.__init__')
@patch('laborious.activities.activities.OPC.__init__')
@patch('laborious.activities.activities.Gates.__init__')
@patch('laborious.activities.activities.ModelMetrics.__init__')
@patch('laborious.activities.activities.API.__init__')
@patch('laborious.activities.activities.MinioRepository')
@patch('laborious.activities.activities.MetricsController')
def test___init___builds_mongo_repository_when_not_provided(
mock_metrics_controller,
mock_minio_repository,
_mock_api_init,
_mock_model_metrics_init,
mock_gates_init,
_mock_opc_init,
_mock_mlflow_init,
_mock_storage_init,
mock_build_mongodb_config,
mock_mongo_repository_cls,
):
postgres_config = {
'host': 'localhost',
'port': 5432,
'user': 'postgres',
'password': 'postgres',
'dbname': 'postgres',
'min_connections': 1,
'max_connections': 10,
}
minio_config = {
'endpoint_url': 'localhost:9000',
'access_key': 'minio',
'secret_key': 'minio123',
'default_bucket': 'test',
'retention_hours': 24,
'secure': False,
}
opc_config = {'bootstrap_servers': 'localhost:9092', 'polling_time': 1000, 'group_id': 'test'}
pi_web_api_config = {'base_url': 'https://pi', 'auth_type': 'bearer', 'auth_token': 'token'}
logger = MagicMock()
notification_handler = MagicMock()
plugin_store = MagicMock()
mlflow_repository = MagicMock()
mock_build_mongodb_config.return_value = {
'connection_string': 'mongodb://root:pass@localhost:27018',
'database_name': 'sientia',
}
Activities(
postgres_config=postgres_config,
plugin_store=plugin_store,
minio_config=minio_config,
opc_config=opc_config,
pi_web_api_config=pi_web_api_config,
logger=logger,
notification_handler=notification_handler,
mlflow_repository=mlflow_repository,
)
mock_build_mongodb_config.assert_called_once()
mock_mongo_repository_cls.assert_called_once_with(
connection_string='mongodb://root:pass@localhost:27018',
database_name='sientia',
logger=logger,
notification_handler=notification_handler,
metrics_controller=mock_metrics_controller.return_value,
)
# The same repository built here is the one handed to Gates, not a second instance.
mock_gates_init.assert_called_once_with(
ANY,
minio_repository=mock_minio_repository.return_value,
mongo_repository=mock_mongo_repository_cls.return_value,
logger=logger,
notification_handler=notification_handler,
metrics_controller=mock_metrics_controller.return_value,
)

View File

@@ -386,7 +386,8 @@ def test_close(mock_shutdown, api):
api.close()
api.pi_web_api_client.close.assert_called_once()
mock_shutdown.assert_called_once_with(api)
# Other instances collected by GC during the test also hit the patched shutdown.
assert mock_shutdown.call_args_list.count(call(api)) == 1
def test_process_pi_web_api_response_success(api):

View File

@@ -35,8 +35,14 @@ def _minio_payload(retrieve_return, status=None):
@fixture
def gates_activity():
def mongo() -> MagicMock:
return MagicMock()
@fixture
def gates_activity(mongo: MagicMock):
gates = Gates(
mongo_repository=mongo,
logger=MagicMock(),
notification_handler=MagicMock(),
metrics_controller=MagicMock(spec=MetricsController),
@@ -61,6 +67,75 @@ metadata = {
}
def test_write_prediction_metadata_no_document_skips_mongo(gates_activity, mongo: MagicMock):
# Act
result = gates_activity._write_prediction_metadata(None, metadata)
# Assert
assert result is None
mongo.insert.assert_not_called()
def test_write_prediction_metadata_empty_document_skips_mongo(gates_activity, mongo: MagicMock):
# Act
result = gates_activity._write_prediction_metadata({}, metadata)
# Assert
assert result is None
mongo.insert.assert_not_called()
def test_write_prediction_metadata_not_configured_returns_none():
# Arrange
gates = Gates(
mongo_repository=None,
logger=MagicMock(),
notification_handler=MagicMock(),
metrics_controller=MagicMock(spec=MetricsController),
)
gates.error = MagicMock()
# Act
result = gates._write_prediction_metadata({'filter_triggered': 'EMPTY_DATA'}, metadata)
# Assert
assert result is None
gates.error.assert_not_called()
def test_write_prediction_metadata_success_generates_id_and_inserts(
gates_activity, mongo: MagicMock
):
# Arrange
document = {'filter_triggered': 'EMPTY_DATA', 'policy': 'STOP', 'counter': 3}
# Act
result = gates_activity._write_prediction_metadata(document, metadata)
# Assert: a plain 24-hex-char string id (matches predictions.metadata_id's varchar(24)),
# not a BSON ObjectId — `insert(...)` never hands one back, so it's generated client-side.
assert result is not None
assert len(result) == 24
int(result, 16) # raises ValueError if not hex
collection, inserted_document, inserted_metadata = mongo.insert.call_args.args
assert collection == Gates._PREDICTION_METADATA_COLLECTION
assert inserted_document == {**document, '_id': result}
assert inserted_metadata == metadata
def test_write_prediction_metadata_insert_failure_swallowed(gates_activity, mongo: MagicMock):
# Arrange
mongo.insert.side_effect = RuntimeError('connection reset')
# Act
result = gates_activity._write_prediction_metadata({'filter_triggered': 'EMPTY_DATA'}, metadata)
# Assert: the prediction write must never be blocked or failed by this
assert result is None
gates_activity.error.assert_called_once()
def test_input_gate_invalid_filter(gates_activity):
# Arrange
input_data = {
@@ -991,7 +1066,8 @@ def test_close_disposes_minio_repository(mock_shutdown):
gates.close()
minio.close.assert_called_once()
assert gates.minio_repository is None
mock_shutdown.assert_called_once_with(gates)
# Other instances collected by GC during the test also hit the patched shutdown.
assert mock_shutdown.call_args_list.count(call(gates)) == 1
@patch.object(SientiaMonitoring, 'shutdown')
@@ -1004,4 +1080,5 @@ def test_close_without_minio_repository(mock_shutdown):
metrics_controller=MagicMock(spec=MetricsController),
)
gates.close()
mock_shutdown.assert_called_once_with(gates)
# Other instances collected by GC during the test also hit the patched shutdown.
assert mock_shutdown.call_args_list.count(call(gates)) == 1

View File

@@ -375,9 +375,9 @@ def test_request_predict_failure(mock_to_datetime, mock_from_dataframe, mlflow):
@patch('laborious.activities.mlflow.rmtree')
@patch('laborious.activities.mlflow.to_datetime')
def test_retrain_model_success_data_success_retrain(
mock_to_datetime, mock_rmtree, mock_mkdtemp, mock_log_artifact, mlflow
mock_to_datetime, mock_rmtree, mock_mkdtemp, mock_log_artifact, mlflow, tmp_path
):
mock_mkdtemp.return_value = 'tmp'
mock_mkdtemp.return_value = str(tmp_path)
mock_to_datetime.side_effect = lambda idx, **kwargs: pd.DatetimeIndex(idx)
mv_alias = MagicMock()
@@ -428,9 +428,9 @@ def test_retrain_model_success_data_success_retrain(
@patch('laborious.activities.mlflow.rmtree')
@patch('laborious.activities.mlflow.to_datetime')
def test_retrain_model_success_with_payload_data(
mock_to_datetime, mock_rmtree, mock_mkdtemp, mock_log_artifact, mlflow
mock_to_datetime, mock_rmtree, mock_mkdtemp, mock_log_artifact, mlflow, tmp_path
):
mock_mkdtemp.return_value = 'tmp'
mock_mkdtemp.return_value = str(tmp_path)
mock_to_datetime.side_effect = lambda idx, **kwargs: pd.DatetimeIndex(idx)
mv_alias = MagicMock(run_id='src')
mlflow.mlflow_repository._client.get_model_version_by_alias.return_value = mv_alias
@@ -473,9 +473,9 @@ def test_retrain_model_success_with_payload_data(
@patch('laborious.activities.mlflow.rmtree')
@patch('laborious.activities.mlflow.to_datetime')
def test_retrain_model_always_uses_retrain_even_with_full_retrain_flag(
mock_to_datetime, mock_rmtree, mock_mkdtemp, mock_log_artifact, mlflow
mock_to_datetime, mock_rmtree, mock_mkdtemp, mock_log_artifact, mlflow, tmp_path
):
mock_mkdtemp.return_value = 'tmp'
mock_mkdtemp.return_value = str(tmp_path)
mock_to_datetime.side_effect = lambda idx, **kwargs: pd.DatetimeIndex(idx)
mv_alias = MagicMock(run_id='src')
mlflow.mlflow_repository._client.get_model_version_by_alias.return_value = mv_alias
@@ -855,3 +855,22 @@ def test_get_reference_data_exception(mlflow):
result = mlflow.get_reference_data(input_data)
assert result is None
def test_find_downloaded_csv_prefers_the_direct_path(mlflow, tmp_path):
direct = tmp_path / 'evaluation_data.csv'
direct.write_text('a\n1\n')
assert mlflow._find_downloaded_csv(str(tmp_path), 'evaluation_data.csv') == direct
def test_find_downloaded_csv_searches_nested_directories(mlflow, tmp_path):
nested = tmp_path / 'artifacts' / 'data' / 'evaluation_data.csv'
nested.parent.mkdir(parents=True)
nested.write_text('a\n1\n')
assert mlflow._find_downloaded_csv(str(tmp_path), 'evaluation_data.csv') == nested
def test_find_downloaded_csv_returns_none_when_missing(mlflow, tmp_path):
assert mlflow._find_downloaded_csv(str(tmp_path), 'evaluation_data.csv') is None

View File

@@ -1,7 +1,7 @@
from unittest.mock import ANY, MagicMock, patch
from pandas import DataFrame, Timestamp
from pytest import fixture, raises
from pandas import DataFrame, Series, Timestamp
from pytest import fixture, mark, raises
from sientia_do.notifications.models import NotificationLevel
from sientia_do.observability.metrics_controller import MetricsController
from sientia_do.temporal.constants import DATETIME_FORMAT_WITH_TZ
@@ -953,3 +953,50 @@ def test_calculate_simple_metrics_unknown_metric_ignored(model_metrics_activity)
assert len(result['metric']) == 1
assert result['metric'].values[0] == 'rmse'
@mark.parametrize(
'failing_stage',
['detect_univariate_drift', 'detect_multivariate_drift', 'get_drift_metrics_dataframe'],
)
@patch('laborious.activities.model_metrics.DriftAnalysis')
def test_get_drift_metrics_reraises_insufficient_data_untouched(
mock_drift_analysis, failing_stage, model_metrics_activity
):
"""Insufficient data is not a stage failure: it propagates without the stage error report."""
error = DriftInsufficientDataError('not enough rows', analysis_rows=1)
getattr(mock_drift_analysis.return_value, failing_stage).side_effect = error
data = DataFrame({'timestamp': ['2023-05-26 11:12:27'], 'target': [1.0], 'feature1': [1.0]})
model_metrics_activity._drift_analyze_stage_error = MagicMock()
with raises(DriftInsufficientDataError) as exc_info:
model_metrics_activity.get_drift_metrics(
reference_data=data,
target_data=data,
target_name='target',
reference_columns=data.drop(columns=['target', 'timestamp']).columns,
drift_metrics=['ks_test'],
chunk_period='min',
metadata=metadata['metadata'],
)
assert exc_info.value is error
model_metrics_activity._drift_analyze_stage_error.assert_not_called()
def test_to_naive_utc_converts_aware_timestamps_to_naive_utc():
series = Series(['2024-01-01T03:00:00-03:00', '2024-01-01T09:00:00-03:00'])
result = ModelMetrics._to_naive_utc(series)
assert result.dt.tz is None
assert result.tolist() == [Timestamp('2024-01-01 06:00:00'), Timestamp('2024-01-01 12:00:00')]
def test_to_naive_utc_keeps_naive_timestamps():
series = Series(['2024-01-01 06:00:00'])
result = ModelMetrics._to_naive_utc(series)
assert result.dt.tz is None
assert result.tolist() == [Timestamp('2024-01-01 06:00:00')]

View File

@@ -1,6 +1,6 @@
import datetime
import os
from unittest.mock import ANY, MagicMock, patch
from unittest.mock import ANY, MagicMock, call, patch
from pytest import fixture, raises
from sientia_do.notifications.models import NotificationLevel
@@ -134,7 +134,8 @@ def test_close(storage, _patch_monitoring_shutdown):
storage.close()
assert storage.minio_repository is None
_patch_monitoring_shutdown.assert_called_once_with(storage)
# Other instances collected by GC during the test also hit the patched shutdown.
assert _patch_monitoring_shutdown.call_args_list.count(call(storage)) == 1
def test_close_when_minio_repository_already_none(storage, _patch_monitoring_shutdown):
@@ -144,7 +145,8 @@ def test_close_when_minio_repository_already_none(storage, _patch_monitoring_shu
storage.close()
assert storage.minio_repository is None
_patch_monitoring_shutdown.assert_called_once_with(storage)
# Other instances collected by GC during the test also hit the patched shutdown.
assert _patch_monitoring_shutdown.call_args_list.count(call(storage)) == 1
def test_load_query_with_minio_offload_no_rows(storage):
@@ -323,3 +325,17 @@ def test_cleanup_minio_objects_expired_list_objects_error(mock_now, storage):
attachment_content=ANY,
)
storage.error.assert_called_once()
def test_close_without_engine_skips_postgres(storage, _patch_monitoring_shutdown):
"""A Storage whose Postgres init never ran (no engine) still closes MinIO."""
del storage.engine
minio = MagicMock()
storage.minio_repository = minio
with patch('laborious.activities.storage.Postgres.close') as mock_postgres_close:
storage.close()
mock_postgres_close.assert_not_called()
minio.close.assert_called_once()
assert storage.minio_repository is None

View File

@@ -444,6 +444,22 @@ def test_write_data_get_node_failed(opc_repository):
assert error_data['attachment_content'] is not None
def test_write_data_without_client_fails_as_get_node_error(opc_repository):
"""A client torn down between validation and the write is reported, not asserted away."""
opc_repository.validate_connection = MagicMock(return_value=(True, {}))
opc_repository.client = None
is_success, error_data = opc_repository.write_data(
'ns=2;s=TestNode', 42.0, 'float', metadata['metadata']
)
assert is_success is False
assert error_data['notification_id'] == f'OPC_WRITE_GET_NODE_ERROR_{opc_repository.id}'
assert 'OPC client is not initialized' in error_data['message']
last_call = opc_repository.emit_metric_sync.call_args_list[-1]
assert last_call.args[1]['result'] == 'GetNodeError:OpcClientNotInitializedError'
def test_write_data_invalid_data_type(opc_repository, mock_client):
opc_repository.validate_connection = MagicMock(return_value=(True, {}))
opc_repository.client = mock_client
@@ -769,3 +785,59 @@ def test_run_reconnect_swallows_an_unexpected_exception(opc_repository):
opc_repository._run_reconnect('BadSessionIdInvalid', 'tok')
assert opc_repository.error.call_count >= 2
def test_create_client_without_watchdog_attribute(opc_repository, mock_client):
"""Older asyncua clients have no `watchdog_intervall`; it is not invented on them."""
opc_repository.cert_path = None
mock_client.aio_obj = MagicMock(spec=['name', 'description', 'product_uri', 'uaclient'])
opc_repository._create_client()
assert opc_repository.client is mock_client
assert not hasattr(mock_client.aio_obj, 'watchdog_intervall')
def test_run_reconnect_success_logs_no_error(opc_repository):
opc_repository._reconnect_locked = MagicMock(return_value=(True, {}))
opc_repository._run_reconnect('BadSessionIdInvalid', 'tok')
opc_repository._reconnect_locked.assert_called_once()
opc_repository.error.assert_not_called()
@pytest.mark.parametrize('failure', [AttributeError('no write_value'), TypeError('bad args')])
def test_write_node_value_falls_back_to_set_value(failure):
node = MagicMock()
node.write_value.side_effect = failure
OpcRepository._write_node_value(node, 'ua-data', 42.0, 'variant')
node.write_value.assert_called_once_with('ua-data')
node.set_value.assert_called_once_with(42.0, 'variant')
def test_write_node_value_uses_set_value_without_write_value():
node = MagicMock(spec=['set_value'])
OpcRepository._write_node_value(node, 'ua-data', 42.0, 'variant')
node.set_value.assert_called_once_with(42.0, 'variant')
def test_write_data_session_not_ready_reports_the_reconnect_it_started(opc_repository):
"""When the SessionNotReady reconnect starts, the write reports reconnect_in_progress."""
opc_repository._session_ready.clear()
opc_repository._reconnect_thread_in_progress = MagicMock(side_effect=[False, True])
opc_repository._start_reconnect = MagicMock()
opc_repository.validate_connection = MagicMock()
is_success, error_data = opc_repository.write_data(
'ns=2;s=TestNode', 42.0, 'float', metadata['metadata']
)
opc_repository._start_reconnect.assert_called_once_with('SessionNotReady', ANY)
opc_repository.validate_connection.assert_not_called()
assert is_success is False
assert error_data['opc_error_kind'] == 'reconnect_in_progress'

View File

@@ -248,3 +248,45 @@ async def test_main_worker_gather_error_exits_one(monkeypatch):
await worker.main()
assert m_logger.return_value.custom_error.called
@mark.asyncio
async def test_main_legacy_runtime_installs_single(monkeypatch):
"""The `legacy` runtime is served by the `single` store runtime."""
monkeypatch.setenv('RUNTIME', 'legacy')
fake_plugin = MagicMock()
fake_plugin.install_runtime = AsyncMock(side_effect=RuntimeError('stop after install'))
with (
patch('laborious.worker.worker.start_prometheus_server'),
patch('laborious.worker.worker.get_logger'),
patch(
'laborious.worker.worker.build_mongodb_config',
return_value={'connection_string': 'cs', 'database_name': 'db'},
),
patch('laborious.worker.worker.NotificationHandler'),
patch('laborious.worker.worker.MetricsController'),
patch(
'laborious.worker.worker.build_plugin_store_config',
return_value={
'base_url': '',
'owner': '',
'repo': '',
'username': None,
'password': None,
'branch': None,
'cache_ttl_seconds': None,
'pypi_index_url': '',
'pypi_username': None,
'pypi_password': None,
},
),
patch('laborious.worker.worker.PluginStore', return_value=fake_plugin),
patch.object(worker.metrics.APP_UP, 'labels') as labels,
patch('laborious.worker.worker.sys.exit', side_effect=SystemExit(1)),
):
labels.return_value = MagicMock()
with raises(SystemExit):
await worker.main()
fake_plugin.install_runtime.assert_awaited_once()
assert fake_plugin.install_runtime.await_args.kwargs['runtime_name'] == 'single'