SIENTIAPDE-1646 Refactor MLFlow tests and update artifact handling
- Enhanced test cases for MLFlow to improve clarity and accuracy in data handling.
- Updated references in tests to use 'evaluation_data.csv' and 'test_data.csv' instead of 'retrain_input.csv' and 'train_data.csv'.
- Introduced a new helper function for creating prediction frames to streamline test setup.
SIENTIAPDE-1646 Update prediction data handling in MLFlow
- Renamed the prediction column in the MLFlow retraining process to improve clarity and consistency in the output data.
SIENTIAPDE-1646 Enhance MLFlow retraining process and evaluation data handling
- Updated the MLFlow class to merge prediction data with retrain data for improved evaluation.
- Renamed target column to "target" and added a timestamp column to the evaluation data.
- Logged both retrain input and evaluation data as artifacts in MLFlow.
Enhance MLFlow reference data handling and testing
- Updated the artifact handling in MLFlow to prioritize 'retrain_input.csv' over 'train_data.csv' when resolving reference data.
- Introduced new methods for resolving artifact names and locating downloaded CSV files.
- Modified the `get_reference_data` method to improve artifact resolution and error handling.
- Expanded unit tests to cover scenarios for missing artifacts and preference logic between retrain and train data CSVs.
Implement new scheduling configurations for model retraining and drift analysis in input_sample.json
- Added three new schedule configurations: `minimal-retrain-test-runtime`, `drift-test-runtime`, and `simple-metrics-test-runtime`.
- Each configuration includes parameters such as model ID, workflow type, frequency, and specific queries for data retrieval.
- Enhanced the structure to support active status and updated timestamps for better tracking of schedule states.
SIENTIAPDE-1646 Add new scheduling configurations and remove outdated documentation
- Introduced new scheduling configurations for minimal retrain, drift analysis, and simple metrics in `input_sample.json`.
- Removed obsolete documentation files related to drift analysis and E2E test reports to streamline project resources.
- Updated E2E tests for minimal retrain to enhance reporting and error handling during model retraining processes.
Update README, requirements, and E2E tests for improved configuration and functionality
- Enhanced the README with updated model configuration examples, including the addition of an alias for production.
- Removed the `requirements-light.txt` file and updated `requirements-local.txt` and `requirements.txt` to replace `asyncua` with `opcua`.
- Refactored E2E test scenarios to utilize scenario input files for better maintainability and clarity.
- Improved test coverage for MinIO offload functionality and added new helper functions for loading scenario inputs.
- Updated `values.yaml` to reflect new global configurations and environment variables for the laborious worker.
Refactor MLFlow retraining logic to always use retrain method
- Removed the conditional logic for full retraining, ensuring the `retrain` method is always called.
- Updated the documentation in the `retrain_model` method to reflect the changes in retraining flow.
- Adjusted tests to verify that the `retrain` method is invoked correctly, while ensuring `train` is not called when the full retrain flag is set.
Update dependencies and refactor MLFlow activities
- Replaced direct GitHub dependencies in `requirements.txt` with specific versioned packages for `sientia_do` and `sientia_model`.
- Refactored imports in `activities.py` to streamline the code structure.
- Enhanced the `MLFlow` class in `mlflow.py` by introducing a method to resolve model aliases, improving flexibility in model lookups.
- Simplified shutdown logic in `worker.py` for better readability.
- Added new tests for MLFlow activities and improved existing test coverage for data handling and model retraining processes.
Enhance environment configuration and update dependencies
- Added new environment variables for PluginStore and MLflow configuration in `.env.example`, including `RUNTIME`, `STORE_BASE_URL`, `STORE_OWNER`, `STORE_REPO`, `STORE_BRANCH`, `STORE_USERNAME`, `STORE_PASSWORD`, `STORE_CACHE_TTL_SECONDS`, `PYPI_SERVER`, `PYPI_USERNAME`, and `PYPI_PASSWORD`.
- Updated `git-requirements-mapping.txt` to reflect changes in repository names.
- Modified `requirements-light.txt` and `requirements.txt` to upgrade `sientia-dataops-library` to version 1.12.0 and `sientia-mlops-library` to version 0.8.1.
- Updated `values.yaml` to include new environment variables for worker runtime and PluginStore configuration.
- Refactored E2E tests to utilize new MLflow repository stubs and PluginStore mocks for improved testing accuracy.
SIENTIAPDE-1712 Enhance logging across various classes by adding logger parameters and improving debug statements. This update includes adjustments in Gates, MLFlow, ModelMetrics, and MLFlowRepository classes for better traceability and observability during operations.
SIENTIAPDE-1712 Enhance logging in Gates, MLFlow, and Storage classes by integrating logger parameter for improved traceability. This update allows for better monitoring of operations and data handling across these components.
SIENTIAPDE-1712 Refactor debug logging for DataFrames across multiple classes. Introduced a new method to log DataFrame content conditionally based on row count in Gates, MLFlow, ModelMetrics, and MLFlowRepository classes, improving debugging capabilities while managing log output effectively.
SIENTIAPDE-1712 Implement debug logging for DataFrames in MLFlow and MLFlowRepository classes. Added a method to log DataFrame content conditionally based on row count, enhancing debugging capabilities while preventing excessive log output.
Update dependencies and refactor input filter handling for consistency
- Updated sientia-dataops-library dependency version from 1.10.3 to 1.10.4 in requirements.txt.
- Refactored input filter handling in the Gates class to read policy and config keys in a case-insensitive manner.
- Updated test cases to ensure consistency in filter key naming conventions across various scenarios.
SIENTIAPDE-1712 Add last_timestamp parameter to MLFlow and Gates activities for enhanced tracking
- Introduced last_timestamp parameter in the MLFlow and Gates classes to improve tracking of data processing times.
- Updated MinioDataFramePayload to handle last_timestamp, ensuring it defaults to the maximum timestamp from the dataframe if not provided.
SIENTIAPDE-1712 Add timestamp column to processed data in MLFlow and improve dataframe validation in MinioDataFramePayload
- Added a 'timestamp' column to the processed data in the MLFlow class for better tracking of data entries.
- Updated the validation check in MinioDataFramePayload to handle None values for the dataframe more explicitly.
Refactor imports in gates.py and mlflow.py for improved organization
- Removed unnecessary import statement in mlflow.py and re-added it in a more appropriate location.
- Cleaned up the workflow metadata assignment in gates.py for better readability.
Refactor MinioDataFramePayload usage across activities
- Updated instances of MinioDataFramePayload initialization in Gates, MLFlow, and Storage classes to use the new from_dict method for better data reconstruction from dictionaries.
- Enhanced the PredictionProcess workflow to utilize the updated payload handling.
- Added passthrough fixtures in tests to accommodate the new from_dict method for consistent testing behavior.
Remove code validation script and refactor imports in activities and workflows
- Deleted the `validate.sh` script, which was responsible for running code quality checks.
- Cleaned up import statements in `activities.py`, `gates.py`, `mlflow.py`, and `storage.py` by removing unused imports and organizing them.
- Refactored initialization methods in `MinioManager` and `MLFlow` classes for improved readability.
- Updated various workflows to ensure compatibility with the new structure and removed unnecessary comments.
- Enhanced test cases to accommodate changes in the activities and workflows, ensuring proper mocking of dependencies.
Implement MinIO Offload and Retention Features
- Added configuration options for MinIO retention hours and offload threshold in README.
- Introduced MinIO payload offloading for large DataFrame-derived payloads, storing them as parquet files.
- Updated activities to utilize MinIO for data loading and cleanup, including new methods for offloading and retention management.
- Refactored existing activities to integrate MinIO functionality, ensuring compatibility with previous workflows.
- Removed the legacy MinioRepository class, consolidating MinIO operations under a new manager structure.
- Updated requirements to use the latest version of the sientia-dataops-library.
Refactor validation script and improve logging in API and model repository
- Updated validation script to include 'e2e/' directory in code formatting and linting checks.
- Enhanced error logging in API class to improve readability of error messages.
- Refactored debug logging in model repository for better structured output.
- Cleaned up import statements in various files for improved organization.
Enhance MLFlow logging and add skip_transform option in MLFlowRepository
- Updated logging in mlflow.py to output processed input data as CSV.
- Introduced skip_transform parameter in MLFlowRepository to conditionally bypass data transformation.
- Improved logging in model_repository.py to display data in a more structured format (to_dict) for predictions and transformations.
Update coverage source in pyproject.toml, add testcontainers for PostgreSQL in requirements-dev.txt, increment image tag and adjust probe delays in values.yaml, and refine condition checks in format_and_export_prediction.py and mlflow.py. Additionally, enhance test coverage in test_gates.py.
Enhance data handling and export processes in Laborious workflows
- Updated `gates.py` to improve data quality validation, filtering, and formatting operations, including enhanced metrics recording.
- Refined `mlflow.py` to better manage model transformations and reference data retrieval from MLflow Model Registry.
- Enhanced `format_and_export_prediction.py` to support separate export of transformed data, improving flexibility in data handling.
- Added comprehensive test coverage for new functionalities, including transformed data formatting and retrain report generation.
- Improved documentation in `README.md` to reflect changes in activities and workflows, ensuring clarity on data processing and export paths.
SIENTIAPDE-1273
Enhance security analysis and SQL injection handling
- Added skip for potential SQL injection false positives in Bandit configuration.
- Updated validate.sh to use the pyproject.toml configuration for Bandit security analysis.
- Refactored code to replace ensure_dataframe utility with direct DataFrame usage in multiple activities, improving clarity and reducing dependencies.
- Removed the deprecated dataframe_utils module to streamline the codebase.
Refactor return type of get_reference_data method in MLFlow class to improve type specificity. Changed from a list of dictionaries with Hashable keys to a generic list of dictionaries for enhanced clarity in data handling.
Update dependencies and refactor data handling in various modules
- Updated sientia-dataops-library dependency version from 1.5.3 to 1.5.4 in requirements files.
- Updated sientia-mlops-library dependency version from 0.39.0 to 0.40.2 in requirements files.
- Refactored return types in Gates, MLFlow, and ModelMetrics classes to return dictionaries instead of DataFrames for improved compatibility with downstream systems.
- Removed the temporal_codec module as it is no longer needed for DataFrame serialization.
- Adjusted data handling in the Drift workflow to ensure proper data structure is maintained.
Refactor data handling in various modules to ensure DataFrame consistency
- Replaced direct DataFrame instantiation with `ensure_dataframe` utility in Gates, MLFlow, OPC, and ModelMetrics classes to standardize data handling.
- Updated return types in several asynchronous methods to return DataFrames instead of dictionaries for improved usability.
- Adjusted data export processes in workflows to convert DataFrames to dictionaries with `to_dict(orient='records')` for compatibility with downstream systems.
Enhance MLFlowRepository and Activities classes with new methods and metrics
- Added `check_artifact_exists` method to MLFlowRepository for verifying artifact presence in the MLflow Model Registry.
- Implemented `get_prediction_data` method in MLFlowRepository to retrieve prediction data from models.
- Updated Activities class to integrate ModelMetrics for improved metrics handling.
- Enhanced tests for artifact existence checks and prediction data retrieval, ensuring robust coverage for new functionalities.
- Updated various workflows to include `transform_table_name` in input data for better data handling.
Enhance metrics handling in Gates and MLFlow classes
- Added checks for `None` response times before emitting OPC writing metrics in the Gates class to prevent unnecessary metric emissions.
- Updated the MLFlow class to conditionally sort and drop duplicates based on the presence of the 'created_at' column, ensuring robustness in data processing.
- Adjusted corresponding tests to validate the new behavior in both classes.
Refactor monitoring and metrics integration across various components
- Removed coverage options from `pyproject.toml`.
- Updated prediction metrics in `README.md` to replace `pipeline_name` with `workflow_name`.
- Upgraded `sientia-dataops-library` dependency version in `requirements-light.txt` and `requirements.txt`.
- Enhanced metrics handling in `laborious` activities, including `Activities`, `Gates`, `MLFlow`, and `OPC`, to utilize a new `MetricsController`.
- Refactored metric emission methods to improve clarity and consistency across the codebase.
- Updated tests to reflect changes in metrics handling and ensure proper functionality.
Update .gitignore and refactor metrics.py for improved logging and consistency
- Added coverage.xml to .gitignore to prevent tracking of coverage reports.
- Refactored metric labels in metrics.py for consistency in string formatting and improved readability.
- Enhanced logging messages in various activities to ensure uniformity in message formatting.
Enhance Gates and MLFlowRepository with new functionalities and improvements
- Added a new method `clean_tmp_files` in the Gates class to remove temporary files associated with model retraining.
- Updated MLFlowRepository methods to improve experiment handling, including dynamic parameter logging and model retrieval.
- Refactored model loading methods to streamline the process and enhance error handling.
- Improved logging for model operations and added support for model parameter retrieval.
- Adjusted minimal_retrain workflow to extend timeouts for activities and ensure proper model configuration handling.
Enhance MinIO integration and update environment configurations
- Added MinIO configuration parameters to .env.example and values.yaml for improved storage management.
- Updated requirements.txt to include necessary libraries for MinIO support.
- Refactored Activities class to utilize Storage for MinIO interactions.
- Enhanced MLFlow class to integrate MinIO for data retrieval during model retraining.
- Introduced build_minio_config function to streamline MinIO configuration setup.
- Updated minimal_retrain workflow to support data storage in MinIO.
Enhance MLFlow and MLFlowRepository with improved data handling and logging
- Refactored MLFlow class to sort data by 'created_at' and drop duplicates for better input preparation.
- Updated MLFlowRepository methods to include detailed logging for artifact downloads and model predictions.
- Introduced LzmaPayloadCodec for efficient payload compression in the worker, optimizing data handling for large payloads.
- Enhanced timestamp handling in treated data to ensure compatibility with model expectations.
Update model retraining and logging enhancements
- Changed the GITHUB_BRANCH value in values.yaml to 'main' for consistency.
- Refactored MLFlow class to improve timestamp handling and error messaging during model retraining.
- Enhanced MLFlowRepository methods to include metadata logging and improved model version retrieval.
- Updated minimal_retrain workflow to support extended timeout for activities and include model configuration in input data.
Update model retraining and reporting functionality
- Changed the GITHUB_BRANCH value in values.yaml to reflect the latest adjustments for retraining the courier.
- Enhanced the Gates class with a new method `format_retrain_report` to format retraining report data according to storage policies.
- Refactored the MLFlow class to improve error handling during model retraining and return structured output.
- Updated the model_repository to utilize the latest MLFlow API for retrieving model versions and improved logging.
- Modified the minimal_retrain workflow to conditionally update the production model based on retraining success.
SIENTIAPDE-1222
Enhance MLFlow and MLFlowRepository with model configuration support
- Introduced `model_config` parameter in MLFlow methods to streamline model handling and configuration management.
- Updated `retrain_model`, `transform`, and `predict` methods to accept `model_config` and `metadata` for improved flexibility and logging.
- Added `detect_and_parse_datetime_index` method to handle datetime index parsing with enhanced error handling and logging.
- Refactored model experiment creation to include transformation and prediction flavors, along with compression options.
- Improved documentation and type hints across methods for better clarity and usability.
Enhance MLFlow data handling by adding timestamp column and improving debug logging
- Added a 'timestamp' column to the input data, converting the index to a datetime format for better tracking of predictions.
- Improved debug logging to provide clearer context by including the input data preview in the log output.
Update MLFlow class to pass logger instance directly to MLFlowRepository
- Modified the initialization of MLFlowRepository in the MLFlow class to pass the logger instance directly, improving logging capabilities and consistency across the application.
SIENTIAPDE-1222 Update MLFlow methods to include metadata parameter
- Modified the transform and predict method calls in the MLFlow class to include a new 'metadata' parameter, enhancing the functionality and data handling capabilities of the model monitoring repository.
Refactor datetime index handling in MLFlow and MLFlowRepository
- Moved the detect_and_parse_datetime_index method from MLFlow to MLFlowRepository for better organization and reusability.
- Updated the method to include enhanced logging and error handling for invalid datetime formats.
- Adjusted the transform method in MLFlowRepository to utilize the new datetime index parsing logic.
- Added unit tests for both valid and invalid datetime index cases to ensure robustness.
Enhance MLFlow debug logging to limit output size
- Updated debug logging statements in the MLFlow activity to include a maximum of 5 items and a depth of 5 for the sample dictionary, improving readability and reducing log clutter for raw and transformed response data.
Refactor MLFlow debug logging for improved readability
- Reformatted debug logging statements in the MLFlow activity to enhance clarity and consistency.
- Ensured that the output of raw and transformed response data is presented in a more readable format, maintaining the use of create_sample_dict for better visualization.
Update image tag in values.yaml and enhance debug logging in Gates and MLFlow activities
- Updated the image tag in values.yaml from '0.0.1' to '0.0.2'.
- Improved debug logging in the Gates activity to format input data and filters for better readability.
- Enhanced MLFlow activity logging to include formatted output for raw and transformed response data, ensuring consistent logging format.
Update requirements and enhance logging in Gates and MLFlow activities
- Updated the sientia-dataops-library and sientia-mlops-library dependencies in requirements.txt to the latest versions.
- Improved debug logging in the Gates activity to display a sample of input data and filters, enhancing clarity and reducing output size.
- Refactored MLFlow activity logging to utilize the create_sample_dict function for better visualization of nested data structures in logs.
