SIENTIAPDE-1712 Enhance logging across various classes by adding logger parameters and improving debug statements. This update includes adjustments in Gates, MLFlow, ModelMetrics, and MLFlowRepository classes for better traceability and observability during operations.
Update dependencies and refactor input filter handling for consistency
- Updated sientia-dataops-library dependency version from 1.10.3 to 1.10.4 in requirements.txt.
- Refactored input filter handling in the Gates class to read policy and config keys in a case-insensitive manner.
- Updated test cases to ensure consistency in filter key naming conventions across various scenarios.
Update environment variables in values.yaml and enhance metric labels in metrics.py
- Changed POSTGRES_USER and POSTGRES_PASSWORD values in values.yaml for improved security.
- Added 'runtime' label to metrics in metrics.py for better environment identification.
- Updated CORE_LABELS to include 'runtime' for consistency across metrics.
- Modified type hint for data parameter in PredictionProcess to use a dictionary for better clarity.
- Adjusted tests to reflect changes in core labels and MinIO configuration.
Refactor MinioDataFramePayload usage across activities
- Updated instances of MinioDataFramePayload initialization in Gates, MLFlow, and Storage classes to use the new from_dict method for better data reconstruction from dictionaries.
- Enhanced the PredictionProcess workflow to utilize the updated payload handling.
- Added passthrough fixtures in tests to accommodate the new from_dict method for consistent testing behavior.
Remove code validation script and refactor imports in activities and workflows
- Deleted the `validate.sh` script, which was responsible for running code quality checks.
- Cleaned up import statements in `activities.py`, `gates.py`, `mlflow.py`, and `storage.py` by removing unused imports and organizing them.
- Refactored initialization methods in `MinioManager` and `MLFlow` classes for improved readability.
- Updated various workflows to ensure compatibility with the new structure and removed unnecessary comments.
- Enhanced test cases to accommodate changes in the activities and workflows, ensuring proper mocking of dependencies.
Implement MinIO Offload and Retention Features
- Added configuration options for MinIO retention hours and offload threshold in README.
- Introduced MinIO payload offloading for large DataFrame-derived payloads, storing them as parquet files.
- Updated activities to utilize MinIO for data loading and cleanup, including new methods for offloading and retention management.
- Refactored existing activities to integrate MinIO functionality, ensuring compatibility with previous workflows.
- Removed the legacy MinioRepository class, consolidating MinIO operations under a new manager structure.
- Updated requirements to use the latest version of the sientia-dataops-library.
Refactor Activities and API Integration for PI Web API
- Reintroduced the API import in the Activities class for proper integration.
- Cleaned up whitespace and formatting in the API class and related tests for improved readability.
- Updated test cases to ensure consistent formatting in error messages and configuration structures for PI Web API.
- Enhanced connectors_config.py with additional whitespace for better organization.
Enhance Activities and Prediction Workflows with PI Web API Integration
- Updated the Activities class to include API integration, allowing for configuration of PI Web API parameters.
- Modified prediction workflows to support output configuration for PI Web API, enabling data writing to the API.
- Refactored connectors_config.py by removing unused PostgreSQL and MongoDB configuration functions.
- Added tests to validate the new PI Web API functionality in activities and workflows, ensuring robust integration and functionality.
Update sientia-mlops-library dependency to version 0.40.5 and fix SQL interval formatting in Drift and SimpleMetrics workflows for improved query accuracy.
Enhance data handling and export processes in Laborious workflows
- Updated `gates.py` to improve data quality validation, filtering, and formatting operations, including enhanced metrics recording.
- Refined `mlflow.py` to better manage model transformations and reference data retrieval from MLflow Model Registry.
- Enhanced `format_and_export_prediction.py` to support separate export of transformed data, improving flexibility in data handling.
- Added comprehensive test coverage for new functionalities, including transformed data formatting and retrain report generation.
- Improved documentation in `README.md` to reflect changes in activities and workflows, ensuring clarity on data processing and export paths.
SIENTIAPDE-1273
Enhance security analysis and SQL injection handling
- Added skip for potential SQL injection false positives in Bandit configuration.
- Updated validate.sh to use the pyproject.toml configuration for Bandit security analysis.
- Refactored code to replace ensure_dataframe utility with direct DataFrame usage in multiple activities, improving clarity and reducing dependencies.
- Removed the deprecated dataframe_utils module to streamline the codebase.
Update version and enhance metrics calculation in Laborious system
- Updated image tag in values.yaml from 1.1.0 to 1.1.1.
- Modified GITHUB_BRANCH environment variable for consistency.
- Added a new method `calculate_simple_metrics` in model_metrics.py to compute various model performance metrics including RMSE, MSE, MAE, and R2.
- Integrated the new metrics calculation into the worker setup, allowing for concurrent processing of simple metrics.
- Updated tests to cover the new metrics calculation functionality, ensuring comprehensive validation of the implementation.
Refactor Drift class to improve target name handling
- Extracted target name from model configuration in the Drift class for better clarity and maintainability.
- Updated test cases to reflect changes in input data structure, ensuring consistency in target name retrieval.
Enhance MLFlowRepository and Activities classes with new methods and metrics
- Added `check_artifact_exists` method to MLFlowRepository for verifying artifact presence in the MLflow Model Registry.
- Implemented `get_prediction_data` method in MLFlowRepository to retrieve prediction data from models.
- Updated Activities class to integrate ModelMetrics for improved metrics handling.
- Enhanced tests for artifact existence checks and prediction data retrieval, ensuring robust coverage for new functionalities.
- Updated various workflows to include `transform_table_name` in input data for better data handling.
Refactor workflow names to include 'subworkflow' prefix
- Updated the workflow definitions and calls in the predictions_batch, format_and_export_prediction, and prediction_process files to use the 'subworkflow' prefix for consistency.
- Adjusted corresponding test cases to reflect these changes in workflow execution calls.
Update test_format_and_export_prediction.py to use prediction_data for workflow execution
- Replaced the mock return value with prediction_data in the test_run_none_path_flag function to ensure accurate testing of the workflow's data handling.
Enhance OPC Metrics Handling and Refactor Write Operations
- Updated the OPC class to return response times for write operations, improving metrics tracking.
- Refactored the Gates activity to incorporate OPC metrics into the metrics writing process.
- Adjusted the manage_output_tags method in OpcRepository to return response times for each tag written.
- Modified tests to validate the new metrics structure and ensure correct behavior of the updated methods.
Enhance validation script and refactor code in various modules
- Updated the validation script to include automatic code formatting and linting fixes using Ruff.
- Removed the `clean_tmp_files` method from the Gates class to streamline functionality.
- Simplified conditional checks in the OpcRepository for better clarity and error handling.
- Added model ID to the minimal retrain workflow for improved tracking.
- Introduced new test cases for error handling in MLFlow and storage operations, ensuring robustness in repository interactions.
Update .gitignore and refactor metrics.py for improved logging and consistency
- Added coverage.xml to .gitignore to prevent tracking of coverage reports.
- Refactored metric labels in metrics.py for consistency in string formatting and improved readability.
- Enhanced logging messages in various activities to ensure uniformity in message formatting.
Refactor model configuration handling in MLFlow and workflows
- Replaced 'model_retention' with 'model_config' to encapsulate retention settings and improve consistency across various components.
- Updated test cases to reflect changes in argument structure, ensuring compatibility with the new model configuration format.
- Added 'prediction_store_policy' to input data handling in workflows for enhanced configuration management.
Update test cases in model repository and prediction process
- Replaced string data with MagicMock in test_transform_success and test_transform_error to improve test isolation.
- Updated the predict method calls in test_predict_success and test_predict_error to reflect changes in argument structure.
- Added 'prediction_store_policy' to the test_run configuration in test_prediction_process for consistency with recent updates.
Implement prediction store policy handling in Gates activity
- Added a new method `get_prediction_store_policy` to validate and parse the prediction store policy.
- Updated `format_prediction` method to utilize the new policy handling, allowing for sorting of predictions based on the specified policy.
- Enhanced test coverage for the new policy handling, including various scenarios for valid and invalid policies.
- Removed the obsolete `coverage.sh` script.
Enhance test cases by adding 'datetime_columns' to input data for MinimalRetrain and PredictionsBatch workflows. This improves metadata handling in asynchronous tests.
Update Gates activity and format_and_export_prediction workflow to use DATETIME_FORMAT_WITH_TZ for consistent timestamp handling
- Modified Gates activity to correctly handle the maximum timestamp without formatting it prematurely.
- Updated format_and_export_prediction workflow to utilize DATETIME_FORMAT_WITH_TZ for timestamp conversion.
- Enhanced tests to ensure timestamp conversion is applied consistently across workflows.
SIENTIAPDE-1174 Update tests to enhance MLFlow and workflow activity assertions
- Added logger initialization in MLFlowRepository for improved logging.
- Updated prediction test assertions to reflect changes in output structure.
- Increased activity method call count assertions in workflow tests for accuracy.
Refactor model_repository and enhance test coverage for MLFlow functionalities
- Updated model_repository to ensure the 'temp' directory is created if it doesn't exist using `exist_ok=True`.
- Added new tests for retraining and updating production models, including error handling scenarios.
- Improved existing tests for model management workflows to ensure robustness and reliability.
Refactor notification handling in Gates and OPC activities to use send_notification method with metadata integration, enhancing error reporting and traceability.
Refactor tests for Postgres activities and improve error handling
- Updated test_postgres.py to enhance the testing of load_custom_query method, including cases for None data and date conversion.
- Refactored repeat_last_prediction tests to use mocks for SQLAlchemy session execution.
- Added tests for export_data_to_postgres method, covering both success and error scenarios.
- Improved the initialization tests for Activities class to ensure proper instantiation of dependencies.
- Enhanced test coverage for OPC repository connection validation.
- Updated tests for prediction workflows to streamline input handling and improve clarity.
- Introduced tests for connectors configuration to validate environment variable handling for MLFlow, OPC, and Postgres.
- Added tests for logger utility to ensure default settings are correctly applied.
Refactor and enhance the laborious workflow and utilities
- Removed outdated test file `test_predictions_batch.py` from workflows.
- Added `input_sample.json` for standardized input configuration.
- Introduced `connectors_config.py` to manage database and service configurations.
- Implemented a logging utility in `logger.py` for consistent logging across the application.
- Created `policies.py` to define retry policies for workflows.
- Developed comprehensive tests for `MLFlowRepository` in `test_model_repository.py`.
- Added extensive tests for `OpcRepository` in `test_opc_repository.py`.
- Updated `test_predictions_batch.py` to reflect new workflow structure and testing methodology.
Implement new get_last_timestamp method in Gates class, refactor MLFlow activity methods to return only transformed data, and update PredictionsBatch and PredictionProcess workflows to utilize Activities module. Add detailed docstrings for new methods and enhance test coverage for get_last_timestamp functionality.
Refactor activity methods and update requirements.txt to enhance functionality and remove deprecated filters. Added detailed docstrings for clarity and improved error handling in data processing workflows.
