SIENTIAPDE-994
Update requirements.txt with new dependencies and refactor activity methods for improved functionality and error handling
This commit is contained in:
54
laborious/activities/activities.py
Normal file
54
laborious/activities/activities.py
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@@ -0,0 +1,54 @@
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from temporalio import activity, workflow
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with workflow.unsafe.imports_passed_through():
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from laborious.activities.postgres import Postgres
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from laborious.activities.mlflow import MLFlow
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from laborious.activities.gates import Gates
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from laborious.activities.opc import OPC
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from typing import Any
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from logging import Logger
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from sientia_do.notifications.handlers import NotificationHandler
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class Activities(Postgres, MLFlow, Gates, OPC):
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def __init__(self,
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postgres_config: dict[str, Any],
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mlflow_config: dict[str, Any],
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opc_config: dict[str, Any],
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logger: Logger, notification_handler: NotificationHandler):
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# Initialize parent classes
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Postgres.__init__(self, host=postgres_config['host'],
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port=postgres_config['port'],
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user=postgres_config['user'],
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password=postgres_config['password'],
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dbname=postgres_config['dbname'],
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min_connections=postgres_config['min_connections'],
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max_connections=postgres_config['max_connections'],
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logger=logger,
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notification_handler=notification_handler)
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MLFlow.__init__(self, mlflow_host=mlflow_config['host'],
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mlflow_port=mlflow_config['port'],
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mlflow_username=mlflow_config['username'],
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mlflow_password=mlflow_config['password'],
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logger=logger,
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notification_handler=notification_handler)
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Gates.__init__(self, logger=logger,
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notification_handler=notification_handler)
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OPC.__init__(self,
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name=opc_config['name'],
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url=opc_config['url'],
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server_uri=opc_config['server_uri'],
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cert_path=opc_config['cert_path'],
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private_key_path=opc_config['private_key_path'],
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server_cert_path=opc_config['server_cert_path'],
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logger=logger,
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notification_handler=notification_handler)
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@activity.defn(name="prepare_activity")
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async def prepare_activity(self, schedule_name: str, model_name: str, model_id: str):
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await super().prepare_activity(schedule_name, model_name, model_id)
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@@ -8,10 +8,9 @@ class BaseActivity:
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self.logger = logger
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self.notification_handler = notification_handler
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@activity.defn(name="prepare_notification_handler")
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async def prepare_notification_handler(self, schedule_name: str,
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model_name: str,
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model_id: str):
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def prepare_activity(self, schedule_name: str,
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model_name: str,
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model_id: str):
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self.notification_handler.base_notification.schedule_name = schedule_name
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self.notification_handler.base_notification.model_name = model_name
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self.notification_handler.base_notification.model_id = model_id
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@@ -1,19 +1,31 @@
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from temporalio import activity, workflow
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with workflow.unsafe.imports_passed_through():
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import traceback
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from logging import Logger
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from sientia_do.notifications.handlers import NotificationHandler
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from laborious.activities.base import BaseActivity
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from typing import Any
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from laborious.utils.filters.conditional_filters import filter_empty_data, filter_specific_variables_null_values
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from pandas import DataFrame
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from sientia_do.notifications.models import NotificationLevel
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from laborious.utils.filters.mlflow_filters import nan_values_filter, api_error_filter
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filter_functions = {
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input_filter_functions = {
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'SPECIFIC_VARIABLES_NULL_VALUES': filter_specific_variables_null_values,
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'EMPTY_DATA': filter_empty_data
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}
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transform_filter_functions = {
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'response_filter': {
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'API_ERROR': api_error_filter,
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},
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'content_filter': {
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'NAN_VALUES': nan_values_filter,
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}
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}
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class Gates(BaseActivity):
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def __init__(self, logger: Logger, notification_handler: NotificationHandler):
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@@ -25,7 +37,9 @@ class Gates(BaseActivity):
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Filters the data based on the filters. The return value is a tuple with the first element
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being the policy and the second element being the confidence status.
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Args:
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input_data (dict): The input data.
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input_data (dict): The input data. Contains:
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filters (dict): The filters to apply.
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data (dict[str, Any]): The data to filter.
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Returns:
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tuple[str, int]: ('stop', -1) if some filter policy is 'stop', ('continue', 2)
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if no filter policy is 'stop' and some filter policy is 'continue',
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@@ -36,8 +50,18 @@ class Gates(BaseActivity):
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filter_output = []
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for fil, config in filters.items():
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if filter_functions[fil](data, config):
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filter_output.append(config['POLICY'])
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try:
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if input_filter_functions[fil](data, config):
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filter_output.append(config['POLICY'])
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except Exception as e:
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trace = traceback.format_exc()
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self.notification_handler.build_and_send_notification(
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notification_id=f"INTPUT_GATE_ERROR__{fil}",
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message=f"Error in filter {fil}:{config}: \n {e}",
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block="input_gate",
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level=NotificationLevel.ERROR,
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attachment_content=trace
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)
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if 'stop' in filter_output:
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return 'stop', -1
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@@ -45,3 +69,75 @@ class Gates(BaseActivity):
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return 'continue', 2
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return None, 0
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@activity.defn(name="mlflow_gate")
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async def mlflow_gate(self, input_data: dict[str, Any]) -> tuple[str, int]:
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filters = input_data['filters']
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data = DataFrame(input_data['data'])
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gate_type = input_data['type']
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filter_output = []
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for fil, config in filters.items():
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if transform_filter_functions['response_filter'][fil](data, config):
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filter_output.append(config['POLICY'])
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self.notification_handler.build_and_send_notification(
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notification_id=f"{gate_type.upper()}_GATE_RESPONSE_FILTER__{fil}",
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message=data['content']['message'],
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block="mlflow_gate",
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level=NotificationLevel.WARNING,
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attachment_content=data['content']['traceback']
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)
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if 'stop' in filter_output:
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return 'stop', -1
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elif 'continue' in filter_output:
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return 'continue', 10
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if gate_type == 'predict':
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return None, 0
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data = DataFrame(data['content'])
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for fil, config in filters.items():
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if transform_filter_functions['content_filter'][fil](data, config):
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filter_output.append(config['POLICY'])
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self.notification_handler.build_and_send_notification(
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notification_id=f"{gate_type.upper()}_GATE_CONTENT_FILTER__{fil}",
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message=f"Data not passed the content filter {fil}:{config}",
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block="mlflow_gate",
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level=NotificationLevel.WARNING,
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attachment_content=data.to_string()
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)
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if 'stop' in filter_output:
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return 'stop', -1
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elif 'continue' in filter_output:
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return 'continue', 18
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return None, 0
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@activity.defn(name="format_prediction")
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async def format_prediction(self, input_data: dict[str, Any]) -> str:
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data = DataFrame(input_data['data'])
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data['timestamp'] = input_data['timestamp']
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data['model_id'] = input_data['model_id']
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data['prediction_confidence'] = input_data['prediction_confidence']
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data['prediction_status'] = 'Good'
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data['comment'] = ""
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data.sort_values(by='timestamp', inplace=True)
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return data.to_dict()
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@activity.defn(name="format_default_prediction")
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async def format_default_prediction(self, input_data: dict[str, Any]) -> str:
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return DataFrame({
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'prediction': [0],
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'response_time': [0],
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'timestamp': [input_data['timestamp']],
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'model_id': [input_data['model_id']],
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'prediction_confidence': [input_data['prediction_confidence']],
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'prediction_status': ['Bad'],
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'comment': [input_data['comment']]
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}).to_dict()
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@@ -0,0 +1,65 @@
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import numpy as np
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from pandas import DataFrame
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from temporalio import activity, workflow
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with workflow.unsafe.imports_passed_through():
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from laborious.activities.base import BaseActivity
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from typing import Any
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from logging import Logger
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from sientia_do.notifications.handlers import NotificationHandler
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from laborious.utils.model_repository import ModelMonitoringRepository
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from sientia_do.notifications.models import NotificationLevel
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class MLFlow(BaseActivity):
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def __init__(self, mlflow_host: str, mlflow_port: int, mlflow_username: str,
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mlflow_password: str, logger: Logger, notification_handler: NotificationHandler):
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super().__init__(logger, notification_handler)
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self.mlflow_host = mlflow_host
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self.mlflow_port = mlflow_port
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self.mlflow_username = mlflow_username
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self.mlflow_password = mlflow_password
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self.model_monitoring_repository = ModelMonitoringRepository(
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f"{mlflow_host}:{mlflow_port}", mlflow_username, mlflow_password
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)
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@activity.defn(name="request_transform")
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async def request_transform(self, input_data: dict[str, Any]) -> tuple[dict[str, Any], str]:
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self.logger.info('Transforming data...')
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data = DataFrame(input_data['data'])
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model_name = input_data['model_name']
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model_retention = input_data['model_retention']
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self.logger.debug(data)
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data = data.pivot(
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index='timestamp', columns='variable',
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values='value')
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data.fillna(np.nan, inplace=True)
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data.reset_index(inplace=True)
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data.columns.name = None
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response_data = self.model_monitoring_repository.transform(
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model_name, data, model_retention)
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timestamp = max(data['timestamp'].values.tolist())
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return response_data, timestamp
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@activity.defn(name="request_predict")
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async def request_predict(self, input_data: dict[str, Any]) -> tuple[dict[str, Any], str]:
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self.logger.info('Predicting data...')
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data = DataFrame(input_data['data'])
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model_name = input_data['model_name']
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model_retention = input_data['model_retention']
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self.logger.debug(data)
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data.replace(np.nan, None, inplace=True)
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response_data = self.model_monitoring_repository.predict(
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model_name, data, model_retention)
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return response_data
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@@ -0,0 +1,76 @@
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import traceback
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from pandas import DataFrame
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from temporalio import activity, workflow
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with workflow.unsafe.imports_passed_through():
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from logging import Logger
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from sientia_do.notifications.handlers import NotificationHandler
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from laborious.activities.base import BaseActivity
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from laborious.utils.repository.opc_repository import OpcRepository
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from typing import Any
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from sientia_do.notifications.models import NotificationLevel
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class OPC(BaseActivity):
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def __init__(self,
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name: str, url: str, server_uri: str,
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cert_path: str, private_key_path: str, server_cert_path: str,
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logger: Logger, notification_handler: NotificationHandler):
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self.logger = logger
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self.notification_handler = notification_handler
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self.name = name
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self.url = url
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self.server_uri = server_uri
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self.cert_path = cert_path
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self.private_key_path = private_key_path
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self.server_cert_path = server_cert_path
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self.opc_repository = OpcRepository(
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name=self.name,
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url=self.url,
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logger=self.logger,
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server_uri=self.server_uri,
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cert_path=self.cert_path,
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private_key_path=self.private_key_path,
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server_cert_path=self.server_cert_path
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)
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self.opc_repository.connect()
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@activity.defn(name='write_opc_data')
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async def write_opc_data(self, input_data: dict[str, Any]):
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data = DataFrame(input_data['data'])
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_opc_servers = input_data['opc_servers']
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opc_output_config = input_data['opc_output_config']
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for tag, config in opc_output_config['prediction_tags'].items():
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try:
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self.opc_repository.write_data(
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tag, data.head(1)['prediction'].values[0], config['data_type'])
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except Exception as e:
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trace = traceback.format_exc()
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self.notification_handler.build_and_send_notification(
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notification_id="WRITE_OPC_PREDICTION_ERROR",
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message=f"Error writing data to OPC server: {e}",
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block="write_opc_data",
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level=NotificationLevel.ERROR,
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attachment_content=trace
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)
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self.logger.error(trace)
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for tag, config in opc_output_config['confidence_tags'].items():
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try:
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self.opc_repository.write_data(
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tag, data.head(1)['prediction_confidence'].values[0], config['data_type'])
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except Exception as e:
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trace = traceback.format_exc()
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self.notification_handler.build_and_send_notification(
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notification_id="WRITE_OPC_CONFIDENCE_ERROR",
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message=f"Error writing data to OPC server: {e}",
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block="write_opc_data",
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level=NotificationLevel.ERROR,
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attachment_content=trace
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)
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self.logger.error(trace)
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@@ -83,7 +83,10 @@ class Postgres(BaseActivity):
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Repeats the last prediction for a given model.
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Args:
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query_items (dict[str, str]): The query items.
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query_items (dict[str, str]): The query items. Contains:
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schema (str): The schema of the table.
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table_name (str): The name of the table.
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model (str): The model to repeat the prediction for.
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Returns:
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None
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@@ -1,69 +0,0 @@
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import numpy as np
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from pandas import DataFrame
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from laborious.utils.filters.base_filter import Filter
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class ApiErrorFilter(Filter):
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def __init__(self, policy):
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self.policy = policy
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super().__init__('API_FILTER')
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def method(self, response: dict, prediction_confidence: int):
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"""
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Processes the API response and determines the next action based on the response and prediction confidence.
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Args:
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response (dict): The API response to be processed.
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prediction_confidence (int): The confidence level of the prediction.
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Returns:
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str: 'stop' if the policy is to stop on captured errors, 'continue' if the policy is to continue on captured errors.
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Raises:
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KeyError: If 'success' or 'content' keys are missing in the response dictionary.
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"""
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captured = False
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if not response and prediction_confidence == 10:
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self.warning('No valid response.')
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captured = True
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else:
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if not response['success']:
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message = response['content']["message"]
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self.warning(
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f'Model repository error: {message}')
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captured = True
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if captured and self.policy == 'stop':
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return 'stop'
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elif captured and self.policy == 'continue':
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return 'continue'
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class NaNValuesFilter(Filter):
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def __init__(self, policy):
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self.policy = policy
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super().__init__('NAN_VALUES')
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def method(self, predictions: DataFrame, prediction_confidence: int):
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"""
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Processes the given predictions DataFrame by replacing None values with NaN,
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dropping the 'timestamp' column if it exists, and checking for NaN values.
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Args:
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predictions (pd.DataFrame): The DataFrame containing prediction data.
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prediction_confidence (float): The confidence level of the predictions.
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Returns:
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float or int or bool: Returns the prediction confidence if the DataFrame
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is not entirely NaN. If all values are NaN and the policy is 'stop',
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returns False. If all values are NaN and the policy is 'continue',
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returns 18.
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"""
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data = predictions.replace({None: np.nan}).drop(
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columns=['timestamp'], errors='ignore')
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if data.isna().all().all():
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if self.policy == 'stop':
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self.warning('All values are NaN.')
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return False
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elif self.policy == 'continue':
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return 18
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return prediction_confidence
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23
laborious/utils/filters/mlflow_filters.py
Normal file
23
laborious/utils/filters/mlflow_filters.py
Normal file
@@ -0,0 +1,23 @@
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import numpy as np
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from pandas import DataFrame
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from laborious.utils.filters.base_filter import Filter
|
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|
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def api_error_filter(response: dict, _config: dict):
|
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if not response:
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return True
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|
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if not response['success']:
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return True
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return False
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|
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def nan_values_filter(predictions: DataFrame, _config: dict):
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data = predictions.replace({None: np.nan}).drop(
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columns=['timestamp'], errors='ignore')
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|
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if data.isna().all().all():
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return True
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return False
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296
laborious/utils/repository/model_repository.py
Normal file
296
laborious/utils/repository/model_repository.py
Normal file
@@ -0,0 +1,296 @@
|
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"""
|
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Model Monitoring Repository
|
||||
|
||||
This module contains the ModelMonitoringRepository class, which is responsible for handling the communication with the Model Monitoring API.
|
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|
||||
It includes the methods that are used to answer ModelMonitoringService requests using the Model Monitoring API functions.
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||||
By Monitoring we mean the evaluation of the performance of models, the generation of reports.
|
||||
|
||||
"""
|
||||
from datetime import datetime
|
||||
import traceback
|
||||
import mlflow
|
||||
import pandas as pd
|
||||
from sientia.ModelServing import ModelServing
|
||||
from pathlib import Path
|
||||
|
||||
|
||||
class ModelMonitoringRepository():
|
||||
def __init__(self, host, username, password):
|
||||
|
||||
self.model_serving = ModelServing(tracking_uri=host,
|
||||
username=username, password=password)
|
||||
|
||||
def get_current_data_df(self, current_data: pd.DataFrame, model_name: str, target: str):
|
||||
"""
|
||||
Get the current data as a DataFrame and update the prediction and target columns
|
||||
|
||||
Parameters:
|
||||
current_data (pd.DataFrame): the current data
|
||||
model_name (str): the name of the model
|
||||
target (str): the target column
|
||||
|
||||
Returns:
|
||||
DataFrame: the current data as a DataFrame
|
||||
|
||||
|
||||
"""
|
||||
predictions = current_data['prediction']
|
||||
|
||||
target = current_data[target]
|
||||
current_data = self.model_serving.get_transformed_data(
|
||||
model_name, current_data, by='model')
|
||||
current_data['prediction'] = predictions
|
||||
current_data['target'] = target
|
||||
|
||||
return pd.DataFrame(current_data).dropna()
|
||||
|
||||
def get_artifact(self, destination: str, search_by: str, run_id: str = None,
|
||||
model_name: str = None, artifact_name: str = None) -> None:
|
||||
"""
|
||||
Get an artifact in MLflow by experiment or model and save it to a destination path using API.
|
||||
If the artifact is searched by model, the latest production version will be used.
|
||||
|
||||
Args:
|
||||
destination: The destination path to save the artifact.
|
||||
search_by: The way to search for the artifact ('experiment' or 'model').
|
||||
run_id: The run ID of the experiment (if search_by is "experiment").
|
||||
model_name: The name of the model (if search_by is "model").
|
||||
artifact_name: The path of the artifact to download.
|
||||
|
||||
Returns:
|
||||
artifact: The artifact(.csv) downloaded from MLflow.
|
||||
"""
|
||||
|
||||
self.model_serving.get_artifact(destination=destination, search_by=search_by,
|
||||
run_id=run_id, model_name=model_name, artifact_name=artifact_name)
|
||||
|
||||
def calculate_model_metrics(self, real_data, predictions, flag):
|
||||
"""
|
||||
Function to calculate the metrics of a model using API
|
||||
|
||||
Parameters:
|
||||
real_data (array): the real data
|
||||
predictions (array): the predictions
|
||||
|
||||
Returns:
|
||||
dict: the metrics of the model including MSE and R2
|
||||
"""
|
||||
return self.model_serving.get_model_metrics(reference_data=None, real_data=real_data, predictions=predictions, type_flag=flag)
|
||||
|
||||
def get_experiment_by_run_id(self, run_id: str) -> dict:
|
||||
# Get the run information using the run_id
|
||||
run = mlflow.get_run(run_id)
|
||||
|
||||
# Extract the experiment ID from the run
|
||||
experiment_id = run.info.experiment_id
|
||||
|
||||
# Get the experiment details using the experiment ID
|
||||
experiment = mlflow.get_experiment(experiment_id)
|
||||
experiment_name = experiment.name
|
||||
return experiment_name
|
||||
|
||||
def get_next_run_name(self, model_name: str) -> str:
|
||||
"""
|
||||
Function to get the next run number of a specific model
|
||||
|
||||
Parameters:
|
||||
model_name (str): the name of the model
|
||||
|
||||
Returns:
|
||||
str: the next run number
|
||||
"""
|
||||
|
||||
runs = mlflow.search_runs(
|
||||
experiment_names=[model_name], order_by=["start_time desc"])
|
||||
next_run_number = len(runs) + 1
|
||||
return f"{model_name}-{next_run_number}"
|
||||
|
||||
def retrain_model(self, data: pd.DataFrame, model_name: str) -> tuple:
|
||||
"""
|
||||
Retrain a model with new data.
|
||||
|
||||
Parameters:
|
||||
data (pandas.DataFrame): The new data to use for retraining.
|
||||
model_name (str): The name of the model to retrain.
|
||||
metrics_list (list): The metrics to be used to compare the models.
|
||||
compare_metrics (bool): If True, the retrain will only be considered if the new model is better than the current one.
|
||||
If False, the retrain will always be considered.
|
||||
split_dataset (bool): If True, the data will be split into X and Y and into training and testing sets.
|
||||
If False, the data will be used as a unique block for retraining.
|
||||
update_report (bool): If True, a report will be created with the data of the retrained model.
|
||||
update_transformation (bool): If True, the model will be updated in the MLflow tracking server.
|
||||
update_prediction (bool): If True, the prediction model will be updated in the MLflow tracking server.
|
||||
shuffle_data (bool): If True, the data will be shuffled before splitting.
|
||||
model_type (str): The type of model to get metrics for. Ex: 'regression', 'classification'.
|
||||
|
||||
|
||||
Returns:
|
||||
mlflow.sklearn.Model: The retrained prediction model.
|
||||
mlflow.sklearn.Model: The retrained data model.
|
||||
mse (float): The mean squared error of the retrained model.
|
||||
r2 (float): The R-squared score of the retrained model.
|
||||
"""
|
||||
|
||||
# load predictor model
|
||||
predictor_uri = f"models:/{model_name}/production"
|
||||
# load transform model
|
||||
latest_production_id = self.model_serving.get_model_run_id(
|
||||
model_name, stage="Production"
|
||||
)
|
||||
transform_uri = self.model_serving.get_model_uri(
|
||||
latest_production_id, prediction=False
|
||||
)
|
||||
# load
|
||||
data_model = mlflow.sklearn.load_model(transform_uri)
|
||||
prediction_model = mlflow.sklearn.load_model(predictor_uri)
|
||||
data_model = data_model.fit(data)
|
||||
treated_data = data_model.predict(data)
|
||||
# align target column with treated_data
|
||||
target_name = data_model.target_variable
|
||||
y = data[target_name]
|
||||
treated_data = pd.merge(
|
||||
treated_data, y, left_index=True, right_index=True)
|
||||
prediction_model = prediction_model.fit(treated_data)
|
||||
# Example usage
|
||||
experiment = self.get_experiment_by_run_id(latest_production_id)
|
||||
pred_model_atributes = vars(prediction_model) # load class attributes
|
||||
data_model_atributes = vars(data_model) # load class attributes
|
||||
mlflow.set_experiment(experiment)
|
||||
experiment_description = "Retrain model {model_name} with new data"
|
||||
current_run_name = self.get_next_run_name(experiment)
|
||||
with mlflow.start_run(
|
||||
run_name=current_run_name, description=experiment_description
|
||||
) as _run:
|
||||
# update transfomation model
|
||||
# fixed parameters
|
||||
for name_atribute, val_atribute in pred_model_atributes.items():
|
||||
if name_atribute != "model":
|
||||
mlflow.log_param(name_atribute, val_atribute)
|
||||
# update prediction model
|
||||
for name_atribute, val_atribute in data_model_atributes.items():
|
||||
if name_atribute != "model":
|
||||
mlflow.log_param(name_atribute, val_atribute)
|
||||
# dynamic parameters, including model itself
|
||||
mlflow.sklearn.log_model(data_model, "data_model")
|
||||
file_path = f"laborious/data/raw_data_{model_name}.csv"
|
||||
data.to_csv(
|
||||
f"laborious/data/raw_data_{model_name}.csv", index=True)
|
||||
# log the data raw
|
||||
mlflow.log_artifact(file_path)
|
||||
|
||||
# dynamic parameters, including model itself
|
||||
mlflow.sklearn.log_model(prediction_model, "prediction_model")
|
||||
mlflow.log_param("retrain", True)
|
||||
|
||||
return "Model retrained successfully", experiment
|
||||
|
||||
def get_experiment(self, experiment_name: str) -> int:
|
||||
experiment = mlflow.get_experiment_by_name(experiment_name)
|
||||
|
||||
if experiment is None:
|
||||
raise ValueError(f'Experiment {experiment_name} not found')
|
||||
|
||||
return int(experiment.experiment_id)
|
||||
|
||||
def get_experiment_last_run(self, experiment_id: int) -> str:
|
||||
runs = mlflow.search_runs(
|
||||
experiment_ids=[experiment_id],
|
||||
filter_string="", # Sem filtro no MLflow ainda
|
||||
output_format="pandas"
|
||||
)
|
||||
|
||||
# Filtrar apenas as runs onde params.retrain == True
|
||||
filtered_runs = runs[runs["params.retrain"] == 'True']
|
||||
|
||||
# Converter a coluna 'end_time' para datetime
|
||||
filtered_runs['end_time'] = pd.to_datetime(filtered_runs['end_time'])
|
||||
|
||||
# Ordenar o DataFrame de forma descendente pela coluna 'end_time'
|
||||
filtered_runs = filtered_runs.sort_values(
|
||||
by='end_time', ascending=False)
|
||||
|
||||
# Pegar a última run_id do DataFrame filtrado e ordenado
|
||||
latest_run_id = filtered_runs.iloc[0]['run_id']
|
||||
|
||||
return latest_run_id
|
||||
|
||||
def update_production_model_by_run_id(self, run_id: str, model_name: str) -> dict:
|
||||
# Registrar o modelo
|
||||
# Aqui estamos assumindo que você já tem um modelo salvo, caso contrário você precisará treiná-lo e salvá-lo primeiro.
|
||||
# Se o modelo já está registrado, você pode usar o método register_model() ou pyfunc.load_model() para isso.
|
||||
mlflow.register_model(
|
||||
f"runs:/{run_id}/prediction_model", model_name)
|
||||
|
||||
# Colocar a versão do modelo em produção
|
||||
# Depois de registrar o modelo, precisamos pegar a versão mais recente do modelo e movê-lo para o estágio 'Production'
|
||||
client = mlflow.tracking.MlflowClient()
|
||||
|
||||
# Obter a versão mais recente registrada do modelo
|
||||
model_versions = client.get_registered_model(
|
||||
model_name).latest_versions
|
||||
max_version = max(model_versions, key=lambda x: int(x.version)).version
|
||||
|
||||
# Mover a versão mais recente do modelo para o estágio de 'Production'
|
||||
client.transition_model_version_stage(
|
||||
name=model_name,
|
||||
version=max_version,
|
||||
stage="Production",
|
||||
archive_existing_versions=True
|
||||
)
|
||||
|
||||
return {
|
||||
'model_name': model_name,
|
||||
'version': max_version,
|
||||
'mlflow_run_id': run_id
|
||||
}
|
||||
|
||||
def update_production_model(self, experiment: str, model_name: str) -> dict:
|
||||
|
||||
experiment_id = self.get_experiment(experiment)
|
||||
run_id = self.get_experiment_last_run(experiment_id)
|
||||
metadata = self.update_production_model_by_run_id(run_id, model_name)
|
||||
|
||||
metadata['mlflow_experiment_id'] = experiment_id
|
||||
|
||||
return metadata
|
||||
|
||||
def transform(self, model_name: str, data: pd.DataFrame, model_retention: int):
|
||||
try:
|
||||
return {
|
||||
'success': True,
|
||||
'content': self.model_serving.get_cached_transform(model_name, data, model_retention).to_dict()
|
||||
}
|
||||
|
||||
except Exception as e:
|
||||
return {
|
||||
'success': False,
|
||||
'content': {
|
||||
'message': str(e),
|
||||
'traceback': traceback.format_exc()
|
||||
}
|
||||
}
|
||||
|
||||
def predict(self, model_name: str, data: pd.DataFrame, model_retention: int):
|
||||
try:
|
||||
start_time = datetime.now()
|
||||
data = self.model_serving.get_cached_predict(
|
||||
model_name, data, model_retention)
|
||||
end_time = datetime.now()
|
||||
data = pd.DataFrame(data, columns=['prediction'])
|
||||
data['response_time'] = (end_time - start_time).total_seconds()
|
||||
|
||||
return {
|
||||
'success': True,
|
||||
'content': data.to_dict()
|
||||
}
|
||||
|
||||
except Exception as e:
|
||||
return {
|
||||
'success': False,
|
||||
'content': {
|
||||
'message': str(e),
|
||||
'traceback': traceback.format_exc()
|
||||
}
|
||||
}
|
||||
112
laborious/utils/repository/opc_repository.py
Normal file
112
laborious/utils/repository/opc_repository.py
Normal file
@@ -0,0 +1,112 @@
|
||||
from pathlib import Path
|
||||
from asyncua.sync import Client
|
||||
from asyncua.crypto.security_policies import SecurityPolicyBasic256
|
||||
from asyncua.ua import DataValue, Variant, VariantType
|
||||
from datetime import datetime
|
||||
from time import sleep
|
||||
from logging import Logger
|
||||
from statistics import mean, median
|
||||
from typing import Callable
|
||||
|
||||
from sientia_do.notifications.models import NotificationLevel
|
||||
|
||||
data_type_map = {
|
||||
'float': VariantType.Float,
|
||||
'double': VariantType.Double,
|
||||
'int': VariantType.Int32,
|
||||
'bool': VariantType.Boolean,
|
||||
'str': VariantType.String,
|
||||
'datetime': VariantType.DateTime,
|
||||
}
|
||||
|
||||
|
||||
class OpcRepository():
|
||||
def __init__(self, name: str, url: str, logger: Logger, server_uri: str,
|
||||
cert_path: str = None, private_key_path: str = None, server_cert_path: str = None):
|
||||
self.url = url
|
||||
self.name = name
|
||||
self.server_uri = server_uri
|
||||
self.cert_path = cert_path
|
||||
self.private_key_path = private_key_path
|
||||
self.server_cert_path = server_cert_path
|
||||
self.logger = logger
|
||||
self.non_receive_count = 0
|
||||
|
||||
self.client = None
|
||||
|
||||
def set_security(self):
|
||||
"""
|
||||
Configures the security settings for the OPC UA client.
|
||||
This method sets up the security policy, certificates, and timeouts
|
||||
required for establishing a secure connection with the OPC UA server.
|
||||
Raises:
|
||||
ValueError: If either the certificate path or private key path is not provided.
|
||||
Attributes:
|
||||
cert_path (str): Path to the client's certificate file.
|
||||
private_key_path (str): Path to the client's private key file.
|
||||
server_cert_path (str, optional): Path to the server's certificate file.
|
||||
server_uri (str): The URI of the server to be used as the application URI.
|
||||
client (opcua.Client): The OPC UA client instance.
|
||||
logger (logging.Logger): Logger instance for logging information.
|
||||
Security Settings:
|
||||
- Security Policy: Basic256
|
||||
- Secure Channel Timeout: 10,000,000 ms
|
||||
- Session Timeout: 10,000,000 ms
|
||||
"""
|
||||
|
||||
if not all([self.cert_path, self.private_key_path]):
|
||||
raise ValueError(
|
||||
"Certificate and private key paths must be provided for secure connection.")
|
||||
cert = Path(self.cert_path)
|
||||
private_key = Path(self.private_key_path)
|
||||
server_cert = Path(
|
||||
self.server_cert_path) if self.server_cert_path else None
|
||||
|
||||
self.client.application_uri = self.server_uri
|
||||
self.logger.info('Setting security...')
|
||||
self.client.set_security(
|
||||
SecurityPolicyBasic256,
|
||||
certificate=str(cert),
|
||||
private_key=str(private_key),
|
||||
server_certificate=str(server_cert)
|
||||
)
|
||||
self.client.secure_channel_timeout = 10000000
|
||||
self.client.session_timeout = 10000000
|
||||
|
||||
def connect(self):
|
||||
self.client = Client(self.url)
|
||||
if self.security:
|
||||
self.set_security()
|
||||
self.logger.info('Starting connection...')
|
||||
self.client.connect()
|
||||
|
||||
def connect(self):
|
||||
"""
|
||||
Establishes a connection to the OPC server.
|
||||
This method initializes the OPC client using the provided URL and
|
||||
sets up security if a certificate path is specified. It then
|
||||
attempts to connect to the server and logs the connection status.
|
||||
Raises:
|
||||
Exception: If the connection to the OPC server fails.
|
||||
"""
|
||||
|
||||
self.client = Client(self.url)
|
||||
if self.cert_path:
|
||||
self.set_security()
|
||||
self.logger.info('Starting connection...')
|
||||
self.client.connect()
|
||||
|
||||
def disconnect(self):
|
||||
self.client.disconnect()
|
||||
self.client = None
|
||||
self.logger.info('Disconnected from OPC server')
|
||||
|
||||
def __del__(self):
|
||||
self.disconnect()
|
||||
|
||||
def write_data(self, node, value, data_type, logger):
|
||||
node = self.client.get_node(node)
|
||||
data = float(value)
|
||||
logger.info(f'Writing {data} - {type(data)} to {node}')
|
||||
ua_data = DataValue(Variant(data, data_type_map[data_type]))
|
||||
node.write_value(ua_data)
|
||||
85
laborious/workflows/predictions_batch.py
Normal file
85
laborious/workflows/predictions_batch.py
Normal file
@@ -0,0 +1,85 @@
|
||||
from temporalio import workflow
|
||||
|
||||
with workflow.unsafe.imports_passed_through():
|
||||
from laborious.activities.postgres import Postgres
|
||||
from laborious.activities.mlflow import MLFlow
|
||||
from laborious.activities.gates import Gates
|
||||
from laborious.activities.opc import OPC
|
||||
from typing import Any
|
||||
|
||||
|
||||
@workflow.defn(name="predictions_batch")
|
||||
class PredictionsBatch():
|
||||
@workflow.run
|
||||
async def run(self, input_data: dict[str, Any]):
|
||||
|
||||
await workflow.execute_activity_method(
|
||||
Postgres.prepare_activity,
|
||||
{
|
||||
'schedule_name': input_data['schedule_name'],
|
||||
'model_name': input_data['model_name'],
|
||||
'model_id': input_data['model_id']
|
||||
}
|
||||
)
|
||||
|
||||
data = await workflow.execute_activity_method(
|
||||
Postgres.load_custom_query,
|
||||
input_data['query']
|
||||
)
|
||||
|
||||
path_flag, confidence = await workflow.execute_activity_method(
|
||||
Gates.input_gate,
|
||||
{
|
||||
'filters': input_data['filters'],
|
||||
'data': data
|
||||
}
|
||||
)
|
||||
|
||||
if path_flag == 'stop':
|
||||
return
|
||||
|
||||
if path_flag == 'continue':
|
||||
# repeat last prediction
|
||||
await workflow.execute_activity_method(
|
||||
Postgres.repeat_last_prediction,
|
||||
{
|
||||
'schema': input_data['schema'],
|
||||
'table_name': input_data['table_name'],
|
||||
'model': input_data['model']
|
||||
}
|
||||
)
|
||||
return
|
||||
|
||||
response_data, last_timestamp = await workflow.execute_activity_method(
|
||||
MLFlow.transform_data,
|
||||
{
|
||||
'data': data,
|
||||
'model_name': input_data['model_name'],
|
||||
'model_retention': input_data['model_retention']
|
||||
}
|
||||
)
|
||||
|
||||
path_flag, confidence = await workflow.execute_activity_method(
|
||||
Gates.mlflow_gate,
|
||||
{
|
||||
'filters': input_data['filters'],
|
||||
'data': response_data,
|
||||
'type': 'transform'
|
||||
}
|
||||
)
|
||||
|
||||
if path_flag == 'stop':
|
||||
return
|
||||
|
||||
if path_flag is None:
|
||||
# procced with prediction
|
||||
response_data = await workflow.execute_activity_method(
|
||||
MLFlow.request_predict,
|
||||
{
|
||||
'data': response_data,
|
||||
'model_name': input_data['model_name'],
|
||||
'model_retention': input_data['model_retention']
|
||||
}
|
||||
)
|
||||
|
||||
path_flag
|
||||
@@ -0,0 +1,60 @@
|
||||
from temporalio import workflow
|
||||
|
||||
with workflow.unsafe.imports_passed_through():
|
||||
from laborious.activities.activities import Activities
|
||||
from typing import Any
|
||||
|
||||
|
||||
@workflow.defn(name="format_and_export_prediction")
|
||||
class FormatAndExportPrediction():
|
||||
@workflow.run
|
||||
async def run(self, input_data: dict[str, Any]):
|
||||
path_flag = input_data['path_flag']
|
||||
data = input_data['data']
|
||||
confidence = input_data['confidence']
|
||||
|
||||
if path_flag is None:
|
||||
# proceed with formatting and exporting
|
||||
prediction = await workflow.execute_activity_method(
|
||||
Activities.format_prediction,
|
||||
{
|
||||
'data': data,
|
||||
'timestamp': input_data['timestamp'],
|
||||
'model_id': input_data['model_id'],
|
||||
'prediction_confidence': confidence,
|
||||
}
|
||||
)
|
||||
|
||||
else:
|
||||
# create default prediction
|
||||
prediction = await workflow.execute_activity_method(
|
||||
Activities.format_default_prediction,
|
||||
{
|
||||
'timestamp': input_data['timestamp'],
|
||||
'model_id': input_data['model_id'],
|
||||
'prediction_confidence': confidence,
|
||||
'comment': input_data['comment']
|
||||
}
|
||||
)
|
||||
|
||||
# write to postgres
|
||||
postgres_holder = workflow.execute_activity_method(
|
||||
Activities.export_data_to_postgres,
|
||||
{
|
||||
'schema': input_data['schema'],
|
||||
'table_name': input_data['table_name'],
|
||||
'data': prediction
|
||||
}
|
||||
)
|
||||
|
||||
opc_holder = workflow.execute_activity_method(
|
||||
Activities.write_opc_data,
|
||||
{
|
||||
'opc_servers': input_data['opc_servers'],
|
||||
'opc_output_config': input_data['opc_output_config'],
|
||||
'data': prediction
|
||||
}
|
||||
)
|
||||
|
||||
await postgres_holder
|
||||
await opc_holder
|
||||
59
laborious/workflows/sub_workflows/prediction_process.py
Normal file
59
laborious/workflows/sub_workflows/prediction_process.py
Normal file
@@ -0,0 +1,59 @@
|
||||
from temporalio import workflow
|
||||
|
||||
with workflow.unsafe.imports_passed_through():
|
||||
from laborious.activities.postgres import Postgres
|
||||
from laborious.activities.mlflow import MLFlow
|
||||
from laborious.activities.gates import Gates
|
||||
from laborious.activities.opc import OPC
|
||||
from typing import Any
|
||||
|
||||
|
||||
@workflow.defn(name="prediction_process")
|
||||
class PredictionProcess():
|
||||
@workflow.run
|
||||
async def run(self, input_data: dict[str, Any]):
|
||||
data = input_data['data']
|
||||
|
||||
path_flag, _confidence = await workflow.execute_activity_method(
|
||||
Gates.input_gate,
|
||||
{
|
||||
'filters': input_data['filters'],
|
||||
'data': data
|
||||
}
|
||||
)
|
||||
|
||||
if path_flag == 'stop':
|
||||
return
|
||||
|
||||
if path_flag == 'continue':
|
||||
# repeat last prediction
|
||||
await workflow.execute_activity_method(
|
||||
Postgres.repeat_last_prediction,
|
||||
{
|
||||
'schema': input_data['schema'],
|
||||
'table_name': input_data['table_name'],
|
||||
'model': input_data['model']
|
||||
}
|
||||
)
|
||||
return
|
||||
|
||||
response_data, last_timestamp = await workflow.execute_activity_method(
|
||||
MLFlow.transform_data,
|
||||
{
|
||||
'data': data,
|
||||
'model_name': input_data['model_name'],
|
||||
'model_retention': input_data['model_retention']
|
||||
}
|
||||
)
|
||||
|
||||
path_flag, confidence = await workflow.execute_activity_method(
|
||||
Gates.mlflow_gate,
|
||||
{
|
||||
'filters': input_data['filters'],
|
||||
'data': response_data,
|
||||
'type': 'transform'
|
||||
}
|
||||
)
|
||||
|
||||
if path_flag == 'stop':
|
||||
return
|
||||
Reference in New Issue
Block a user